View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18384_low_9 (Length: 522)
Name: NF18384_low_9
Description: NF18384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18384_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 15766874 - 15766768
Alignment:
| Q |
14 |
aatatatcaaataatttactatttatgcaaaattttacatggatatggattttcaatttaatgatagactttaagaaatttttacaaatttataacagaa |
113 |
Q |
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| T |
15766874 |
aatatatcaaataatttactatttatgcaaaattttacatggatatggattttcaatttaatgatagactttaagaaatttttacaaatttataacagaa |
15766775 |
T |
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| Q |
114 |
actgaag |
120 |
Q |
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| T |
15766774 |
actgaag |
15766768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 15766707 - 15766627
Alignment:
| Q |
251 |
ttcagtatgcatgattctcaaaacatgcttttattaaaatttgattgaaattactaggaaaaagcctagaggagttttttg |
331 |
Q |
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| T |
15766707 |
ttcagtatgcatgattctcaaaacgtgcttttattaaaatttgattgaaattactaggaaaaagcctagaggagttttttg |
15766627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 15766769 - 15766691
Alignment:
| Q |
158 |
agttaacattggaaatgataataattcaaagtaccaaagggaattcttaatacgtgagtttgttcagtatgcatgattc |
236 |
Q |
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| T |
15766769 |
agttgacattggaaatgataataattcaaagtaccaaagggaattcttaatacgtgagtttgttcagtatgcatgattc |
15766691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 434 - 504
Target Start/End: Complemental strand, 15766510 - 15766440
Alignment:
| Q |
434 |
acaaaaaataataagaaaacgagaggtagaggattgaaattgatgtgtgtggctattaggcgggtatagta |
504 |
Q |
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| T |
15766510 |
acaaaaaataataagaaaacgagaggtagaggattgaaattgatgtgtgtggctattaggcgggtatagta |
15766440 |
T |
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