View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18385_high_4 (Length: 313)

Name: NF18385_high_4
Description: NF18385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18385_high_4
NF18385_high_4
[»] chr4 (1 HSPs)
chr4 (1-296)||(39814671-39814966)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 39814966 - 39814671
Alignment:
Q  1 ccgagggatgtaacatctcagcggacgcagccaatgtattgaataaggcacttgatgtttacctcaaaagattgataaaaccctgtttagatttagcggc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814966 ccgagggatgtaacatctcagcggacgcagccaatgtattgaataaggcacttgatgtttacctcaaaagattgataaaaccctgtttagatttagcggc 39814867  T
Q  101 ttctaaacctgtaaataaatttagtggtcacatccaacctggtatgaactatttgccacagaataggagtgtgcaacagctaattggatctgcttctgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814866 ttctaaacctgtaaataaatttagtggtcacatccaacctggtatgaactatttgccacagaataggagtgtgcaacagctaattggatctgcttctgca 39814767  T
Q  201 tcaatctctgattttagagcagcaatggagttgaatcctgccatactaggggaagattggtctctacattttgagaaggtttgctttcgtgcttca 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814766 tcaatctctgattttagagcagcaatggagttgaatcctgccatactaggggaagattggtctctacattttgagaaggtttgctttcgtgcttca 39814671  T

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