View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18385_low_2 (Length: 561)
Name: NF18385_low_2
Description: NF18385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18385_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 39600925 - 39601479
Alignment:
| Q |
1 |
ttatatcatataagtgcttatgtaaaagttatttatttctataacnnnnnnngaaagtcaaaacattttcataagttgttttggcaagctatcctgaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39600925 |
ttatatcatataagtgcttatgtacaagttatttatttctataacaaaaaaaaaaagtcaaaacattttcataagttgttttggcaagctatcctgaaga |
39601024 |
T |
|
| Q |
101 |
gtttatgcccttatgatgaagttgtgtttaatttacttgatagattacctccaaacaagatttggtatgaaatcagctagatgttcataatcagttaaag |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39601025 |
gtttatgcccttatgatgaaattgtgtttaatttacttgatagattacctccaaacaagatttggtatgaaatcagctagatgttcataatcagttaaag |
39601124 |
T |
|
| Q |
201 |
cattccaaacagagttaatatcagcattgatagaaatctcagccttaactctccgttctctccaagaaaccacttgaagctcacagtgaacctcacggtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39601125 |
cattccaaacagagttaatatcagcattgatagaaatctcagccttaactctccgttctctccaagaaaccacttgaagctcacagtgaacctcacggtc |
39601224 |
T |
|
| Q |
301 |
accatcttcttctagcccattattcaaatttccacccaaatggcttctgggtttgcactgtgttgttgaggagagagcaatgctcttgtgaaagtggcga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39601225 |
accatcttcttctagcccattattcaaatttccacccaaatggcttctgggtttgcactgtgttgttgaggagagagcaatgctcttgtgaaagtggcga |
39601324 |
T |
|
| Q |
401 |
gggaaaaagagactcaaagataaatatgatggtttggaatgtagggaagagtgtagagaaagtgggttagctcttgaagaagaagctctgcaagcagtga |
500 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39601325 |
gggaaaaagagactcaaagataaaaatgatggtttggaatgtagggaagagcgtagagaaagtgggttagctcttgaagaagaagctctgcaagcagtga |
39601424 |
T |
|
| Q |
501 |
tcattgaagtaagtgtgagtgtgtgaagacgaagctgagttgttgttgatgatgt |
555 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39601425 |
tcattgaagtaagtgtgagtgtgtgaagacgaagctgagttgttgttgatgatgt |
39601479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 46213725 - 46213758
Alignment:
| Q |
1 |
ttatatcatataagtgcttatgtaaaagttattt |
34 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
46213725 |
ttatatcatataagtgcttatgtaaaagctattt |
46213758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University