View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18385_low_3 (Length: 393)
Name: NF18385_low_3
Description: NF18385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18385_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 12 - 378
Target Start/End: Original strand, 50047533 - 50047899
Alignment:
| Q |
12 |
atgaaccaccagatttgtcatgtttccgataatatatgcagtgagtccgatgttaaacagcatataaaaaatattgaaaaccttctccgttgtattttct |
111 |
Q |
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| T |
50047533 |
atgaaccaccagatttgtcatgtttccgataatatatgcagtgagtccgatgttaaacagcatataaaaaatattgaaaaccttctccgttgtattttct |
50047632 |
T |
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| Q |
112 |
gcatgtaaatctccatagccaacagtggtaagggttacaatagaccaatacatggagtaagtgtaacccgatccgacactcctatgcttaaaatcctcta |
211 |
Q |
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| T |
50047633 |
gcatgtaaatctccatagccaacagtggtaagggttacaatagaccaatacatggagtaagtgtaacccgatccgacactcctatgcttaaaatcctcta |
50047732 |
T |
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| Q |
212 |
cctgcttcccaatccacgtgtttccgggtgatttgtgatggaaagccaaccaaaaatacacgcagcctgtgaagtgcactgcaaatagcgtaacctatga |
311 |
Q |
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| T |
50047733 |
cctgcttcccaatccacgtgtttccgggtgatttgtgatggaaagccaaccaaaaatacacgcagcctgtgaagtgcactgcaaatagcgtaacctatga |
50047832 |
T |
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| Q |
312 |
taaaccaacaaaagtgaagctcaaaattaagaacctaaattagacaatttgatggttatatcttatt |
378 |
Q |
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| T |
50047833 |
taaaccaacaaaagtgaagctcaaaattaagaacctaaattagacaatttgatggttatatcttatt |
50047899 |
T |
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