View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18385_low_7 (Length: 205)

Name: NF18385_low_7
Description: NF18385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18385_low_7
NF18385_low_7
[»] chr4 (3 HSPs)
chr4 (111-186)||(40275613-40275688)
chr4 (16-110)||(55849419-55849514)
chr4 (17-63)||(55852052-55852098)
[»] chr3 (5 HSPs)
chr3 (16-110)||(27462183-27462277)
chr3 (16-99)||(20868752-20868836)
chr3 (58-110)||(27462292-27462344)
chr3 (18-95)||(24595283-24595360)
chr3 (27-95)||(51308878-51308946)
[»] chr6 (3 HSPs)
chr6 (16-105)||(9664637-9664726)
chr6 (16-112)||(3074987-3075084)
chr6 (26-110)||(787353-787437)
[»] chr5 (2 HSPs)
chr5 (15-81)||(27172855-27172921)
chr5 (31-99)||(18587374-18587442)
[»] chr1 (2 HSPs)
chr1 (16-86)||(20225515-20225585)
chr1 (16-110)||(20226820-20226916)
[»] chr8 (8 HSPs)
chr8 (17-99)||(35416100-35416182)
chr8 (31-96)||(31909113-31909178)
chr8 (20-99)||(3788511-3788591)
chr8 (26-99)||(12062852-12062926)
chr8 (31-99)||(19472494-19472563)
chr8 (31-99)||(19543419-19543488)
chr8 (31-99)||(19589208-19589277)
chr8 (27-98)||(3785802-3785874)
[»] chr7 (1 HSPs)
chr7 (20-99)||(2577057-2577137)
[»] chr2 (1 HSPs)
chr2 (16-113)||(26608005-26608101)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 2e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 40275688 - 40275613
Alignment:
Q  111 attactttcatttttattgtctcaacttgtggctatgctaaaaatttcaaaataaaataatccatgtctgatttcc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40275688 attactttcatttttattgtctcaacttgtggctatgctaaaaatttcaaaataaaataatccatgtctgatttcc 40275613  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 55849514 - 55849419
Alignment:
Q  16 ctatcttttccattcttgtatcatttcaactatcatcaatataatagtttt-tcaagcttttctctctatatccatggatgccatctttactaaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||| ||| ||||||    
T  55849514 ctatcttttccattcttgtatcatttcaactatcatcaatacaatagttttcccaagcttttctctctatatccatggatgccatgtttcctaaca 55849419  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 55852098 - 55852052
Alignment:
Q  17 tatcttttccattcttgtatcatttcaactatcatcaatataatagt 63  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||    
T  55852098 tatcttttacattcttgtatcatttcaactatcatcaatacaatagt 55852052  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 27462183 - 27462277
Alignment:
Q  16 ctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagcttttctctctatatccatggatgccatctttactaaca 110  Q
    ||||||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  27462183 ctatctttttcattcttgtatcatttcaactataatcaatacaatagttttccaagcttttctctctatatccatggatgccatgtttactaaca 27462277  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 20868752 - 20868836
Alignment:
Q  16 ctatcttttccattcttgtatcat-ttcaactatcatcaatataatagtttttcaagcttttctctctatatccatggatgccat 99  Q
    ||||||||| ||||||||||| || ||||||||||||||||| |||||||||  |||||||||||||| | | ||||||||||||    
T  20868752 ctatctttttcattcttgtattatgttcaactatcatcaatacaatagttttctaagcttttctctctcttttcatggatgccat 20868836  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 27462292 - 27462344
Alignment:
Q  58 aatagtttttcaagcttttctctctatatccatggatgccatctttactaaca 110  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  27462292 aatagttttccaagcttttctctctatatccatggatgccatgtttactaaca 27462344  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 24595283 - 24595360
Alignment:
Q  18 atcttttccattcttgtatcattt-caactatcatcaatataatagtttttcaagcttttctctctatatccatggatg 95  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||||| | |||||||||||||||| | ||||||||    
T  24595283 atctttttcattcttgtatcattttcaactatcatcaatacaatagtttct-aagcttttctctctatcttcatggatg 24595360  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 51308878 - 51308946
Alignment:
Q  27 attcttgtatcatttcaactatcatcaatataatagtttttcaagc-ttttctctctatatccatggatg 95  Q
    |||||||||||||||||||||| ||||||| |||| ||| | |||| |||||||||||| | ||||||||    
T  51308878 attcttgtatcatttcaactattatcaatacaataatttat-aagctttttctctctattttcatggatg 51308946  T

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Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 9664726 - 9664637
Alignment:
Q  16 ctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagcttttctctctatatccatggatgccatctttac 105  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  9664726 ctatctttttcattcttgtatcatttcaactataatcaatacaatagtttttcaagcttttctctctatatccatggatgccatgtttac 9664637  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 3074987 - 3075084
Alignment:
Q  16 ctatcttttccattcttgtatcatttcaactatcatcaa-tataatagtttttcaagcttttctctctatatccatggatgccatctttactaacaat 112  Q
    ||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  3074987 ctatcttttccattcttatatcatttcaactatcatcaaatacaatagttttccaagcttttctctctatatccatggatgccatgttttctaacaat 3075084  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 787353 - 787437
Alignment:
Q  26 cattcttgtatcatttcaactatcatcaatataatagtttttcaagcttttctctctatatccatggatgccatctttactaaca 110  Q
    ||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||| ||||||| ||| ||| ||||||    
T  787353 cattcttgtatcatttcaagtatcatcaatacaatagttttccaaacttttctctctatatctatggatgacatgtttcctaaca 787437  T

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Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 27172921 - 27172855
Alignment:
Q  15 actatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagcttttctctc 81  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  27172921 actatcttttccattcttgtatcatttcaactatcatcaatagaatagttttccaagcttttctctc 27172855  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 18587442 - 18587374
Alignment:
Q  31 ttgtatcatttcaactatcatcaatataatagtttttcaag-cttttctctctatatccatggatgccat 99  Q
    ||||||||||| ||||||||||||||||| | ||||  |||  |||||||||||| ||||||||||||||    
T  18587442 ttgtatcattttaactatcatcaatataa-atttttctaagttttttctctctatttccatggatgccat 18587374  T

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Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 20225585 - 20225515
Alignment:
Q  16 ctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagcttttctctctatat 86  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  20225585 ctatcttttccattcttgtatcatttcaattatcatcaatacaatagttttgcaagcttttctctctatat 20225515  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 20226916 - 20226820
Alignment:
Q  16 ctatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagcttttct--ctctatatccatggatgccatctttactaaca 110  Q
    ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||  ||||||||||||| ||||| | ||| ||||||    
T  20226916 ctatctttttcattcttgtatcatttcaattatcatcaatacaatagtttttcaaacttttctctctctatatccatgaatgccgtgtttcctaaca 20226820  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 35416182 - 35416100
Alignment:
Q  17 tatcttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagcttttctctctatatccatggatgccat 99  Q
    |||||| | |||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |  |||||||||||    
T  35416182 tatcttcttcattattgtatcatttcaactaccattaatacaatagtttttcaagcttttctctctatttttatggatgccat 35416100  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 31909178 - 31909113
Alignment:
Q  31 ttgtatcatttcaactatcatcaatataatagtttttcaagcttttctctctatatccatggatgc 96  Q
    ||||||| |||||||||||||||||| ||||| |||  |||||||||||||||| | |||||||||    
T  31909178 ttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctattttcatggatgc 31909113  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 3788591 - 3788511
Alignment:
Q  20 cttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagctt-ttctctctatatccatggatgccat 99  Q
    ||||| ||||||||||||||||||||||| ||||||| |||| ||||  || ||| |||||||||| | ||||||||||||    
T  3788591 ctttttcattcttgtatcatttcaactattatcaatacaataattttctaaacttcttctctctattttcatggatgccat 3788511  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 12062852 - 12062926
Alignment:
Q  26 cattcttgtatcattt-caactatcatcaatataatagtttttcaagcttttctctctatatccatggatgccat 99  Q
    ||||||||||| |||| |||| |||||||| | |||||||||  |||||||||||||||| | ||||||||||||    
T  12062852 cattcttgtattattttcaaccatcatcaagagaatagttttctaagcttttctctctattttcatggatgccat 12062926  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 19472563 - 19472494
Alignment:
Q  31 ttgtatcatttcaactatcatcaatataatagtttttcaagc-ttttctctctatatccatggatgccat 99  Q
    ||||||||||||||||||  ||||||||||| ||| | |||| |||||||||||| | ||||||||||||    
T  19472563 ttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccat 19472494  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 19543488 - 19543419
Alignment:
Q  31 ttgtatcatttcaactatcatcaatataatagtttttcaagc-ttttctctctatatccatggatgccat 99  Q
    ||||||||||||||||||  ||||||||||| ||| | |||| |||||||||||| | ||||||||||||    
T  19543488 ttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccat 19543419  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 19589208 - 19589277
Alignment:
Q  31 ttgtatcatttcaactatcatcaatataatagtttttcaagc-ttttctctctatatccatggatgccat 99  Q
    ||||||||||||||||||  ||||||||||| ||| | |||| |||||||||||| | ||||||||||||    
T  19589208 ttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccat 19589277  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 3785874 - 3785802
Alignment:
Q  27 attcttgtatcatttcaactatcatcaatataatagtttttcaagctt-ttctctctatatccatggatgcca 98  Q
    |||||||||||||||||||||| ||||||| |||| |||   |||||| |||||||||| | |||||||||||    
T  3785874 attcttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctctattttcatggatgcca 3785802  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 2577057 - 2577137
Alignment:
Q  20 cttttccattcttgtatcatttcaactatcatcaatataatagtttttcaagctt-ttctctctatatccatggatgccat 99  Q
    ||||| ||||||||||||||||||||||| ||||||| |||| ||||  |||||| |||||||||| | ||||||||||||    
T  2577057 ctttttcattcttgtatcatttcaactattatcaatacaataattttctaagcttcttctctctattttcatggatgccat 2577137  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 26608101 - 26608005
Alignment:
Q  16 ctatcttttccattcttgtatca-tttcaactatcatcaatataatagtttttcaagcttttctctctatatccatggatgccatctttactaacaatt 113  Q
    ||||||||| ||||||||||||| |||||||||||||||||| ||||  |||  |||||||||||||||| | |||||||| ||| |||  ||||||||    
T  26608101 ctatctttttcattcttgtatcattttcaactatcatcaatacaata--tttctaagcttttctctctattttcatggatgtcatgtttcttaacaatt 26608005  T

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