View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18386_high_1 (Length: 874)
Name: NF18386_high_1
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18386_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 740; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 9 - 858
Target Start/End: Complemental strand, 42918040 - 42917191
Alignment:
| Q |
9 |
agcagcacagacaccaagtaggttcatttatcaaactaagtgtgcttgtttaagtacgtctcagtttcttatggcagaatacatcaaacaacgggcattg |
108 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42918040 |
agcagcaaagacaccaagtaggttcatttatcaaactaagtgtgcttgtttaagtacgtctcagtttcttatggcagaatacatcaaacaacgggcattg |
42917941 |
T |
|
| Q |
109 |
catcacatgaaaaatactcaaataaaactaagggagtaaatctgagaaaactagtttgataaaagaatatatttctttggagtaggaagcattacccaag |
208 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42917940 |
catcacatgacaaatactcaaataaaactaagggagtaaatctgagaaaactagtttgataaaagaatatatttctttggagtaggaagcattacccaag |
42917841 |
T |
|
| Q |
209 |
gcaatgcaccgatatgatcttcatgaccgtgtgttataactactgcttcaattttgtggctccattttttaataaatgttgtatcaggtattatcttctg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42917840 |
gcaatgcaccgatatgatcttcatgaccgtgtgttataactactgcttcaattttgtggctccattttttaataaatgttgtatcaggtattatcttctg |
42917741 |
T |
|
| Q |
309 |
gaccccaagctcatcatcgctgaaatcagttaacaatgtagacnnnnnnnggccggttaacctagaaaactaatgaaaatcagagcaaaaaacaatcatg |
408 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
42917740 |
gaccccaagctcatcatcgctgaaaccagttaacaatgtatacaaaaaaaggtcggttaacctagaaaactaatgaaaatcagagaaaaatacaatcatg |
42917641 |
T |
|
| Q |
409 |
aagcagcaatttgataccgcataatggacttgtaaaccctaccctggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagca |
508 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42917640 |
aagcagcaatttgatacagcataatggacttgtaaaccctaccctggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagca |
42917541 |
T |
|
| Q |
509 |
tacaattcatcccaatttcacccaacccaccaataggaagaactcgaaggggcggcccatctgacccttcgtaaaattgctccatctttcgttgaacgga |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42917540 |
tacaattcatcccaatttcacccaacccaccaataggaagaactcgaaggggcggcccatctgacccttcgtaaaattgctccatctttcgttgaacgga |
42917441 |
T |
|
| Q |
609 |
atcttccatgctttttctaggaccttcaattcttcttggtcttttgagcactactttggccccatcagtatctccttaaaacacaacaatataatccaat |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42917440 |
atcttccatgctttttctaggaccttcaattcttcttggtcttttgtgcactactttggctccatcagtatctccttaaaacacaacaatataatccaat |
42917341 |
T |
|
| Q |
709 |
ttcattcaaattttnnnnnnnnnnnnnnnttgttccgtaattgaaatggtagaagcgtgaaattaaagagaggatgaattacttgggagagcattggaac |
808 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42917340 |
ttcattcaaattttaaaaaataaaaataattgttccgtaattgaaatggtagaagagtgaaattaaagagaggatgaattacttgggagagcattggaac |
42917241 |
T |
|
| Q |
809 |
gaaaacggcaataatgagaacgccgcgtcgggtgaaggcgatgaaatctg |
858 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42917240 |
gaaaacggcaataatgagaacgccgcgtcgggtgaaggcgatgaaatctg |
42917191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 7e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 454 - 644
Target Start/End: Original strand, 33965973 - 33966163
Alignment:
| Q |
454 |
ggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcatcccaatttcacccaacccaccaataggaagaactc |
553 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||| || |||||||||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||| | |
|
|
| T |
33965973 |
ggaaacatgataccagcatcaatgaggatataacggtcatgattcccaacgagcatacagttcattccaatttcacctaaaccaccaataggaagaacac |
33966072 |
T |
|
| Q |
554 |
gaaggggcggcccatctgacccttcgtaaaattgctccatctttcgttgaacggaatcttccatgctttttctaggaccttcaattcttct |
644 |
Q |
| |
|
| | || || || || ||||| ||||||||||||||| | |||||||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
33966073 |
gtaaaggtggtccgtcatttccttcataaaattgctccatcctacgttgaacagaatcttccatactttttcttggaccttcaattcttct |
33966163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 192 - 333
Target Start/End: Original strand, 33965175 - 33965316
Alignment:
| Q |
192 |
aggaagcattacccaaggcaatgcaccgatatgatcttcatgaccgtgtgttataactactgcttcaattttgtggctccattttttaataaatgttgta |
291 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| | ||||| |||||| |
|
|
| T |
33965175 |
aggaagcattacccagggcaacgcaccaatatgatcttcatgaccatgtgttataacaagcgcttcaattttgtggctccattttcttataaacgttgta |
33965274 |
T |
|
| Q |
292 |
tcaggtattatcttctggaccccaagctcatcatcgctgaaa |
333 |
Q |
| |
|
|||||||| ||||| || || || || ||||||| ||||||| |
|
|
| T |
33965275 |
tcaggtataatcttttgtactccgaggtcatcatagctgaaa |
33965316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University