View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18386_high_14 (Length: 244)
Name: NF18386_high_14
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18386_high_14 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 132063 - 131884
Alignment:
| Q |
1 |
atataagttaagcttgtttatgtaaaaacagaacggtacatcaaaatattttgtatatttctttctttacttaccaattatgtgcatattttgcagtcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
132063 |
atataagttaagcttgtttatgtaaaaacagaacggtacatcaaaagattttgtatatttctttctttacttaccaattatgtgcatattttggagtcta |
131964 |
T |
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| Q |
101 |
catatgtgcatgtttgatagtcccagtttggtaatttgttttcattacttctgctggtcccatatgttttcatgggtata |
180 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
131963 |
catatgtgcatgtttgatagtccctgtttggtaatttgttttcattacttctgttggtcctatatgttttcatgggtata |
131884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 18233142 - 18233322
Alignment:
| Q |
1 |
atataagttaagcttgtttatgtaaaaacagaacggtacatcaaaat-attttgtatatttctttctttacttaccaattatgtgcatattttgcagtct |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18233142 |
atataagttaagcttgtttatgtaaaaacagaacggtacatcaaaaagattttgtatatttctttctttacttaccaattatgtgcatattttgcagtct |
18233241 |
T |
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| Q |
100 |
acatatgtgcatgtttgatagtcccagtttggtaatttgttttcattacttctgctggtcccatatgttttcatgggtatat |
181 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
18233242 |
acatatgtgcatgtttgatagtccca-tttggtaatttgttttcattacttctgttggtcctatatgttttcatgggtatat |
18233322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 41 - 181
Target Start/End: Original strand, 16259 - 16399
Alignment:
| Q |
41 |
tcaaaatattttgtatatttctttctttacttaccaattatgtgcatattttgcagtctacatatgtgcatgtttgatagtcccagtttggtaatttgtt |
140 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16259 |
tcaaaagattttgtatatttctttctttacttaccaattatgtgcatattttgcagtctacatatgtgcatgtttgatagtccctgtttggtaatttgtt |
16358 |
T |
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| Q |
141 |
ttcattacttctgctggtcccatatgttttcatgggtatat |
181 |
Q |
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| T |
16359 |
ttcattacttctgttggtcctatatgttttcatgggtatat |
16399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 41 - 181
Target Start/End: Original strand, 1093 - 1233
Alignment:
| Q |
41 |
tcaaaatattttgtatatttctttctttacttaccaattatgtgcatattttgcagtctacatatgtgcatgtttgatagtcccagtttggtaatttgtt |
140 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1093 |
tcaaaagattttgtatatttctttctttacttaccaattatgtgcatattttgcagtctacatatgtgcatgtttgatagtccctgtttggtaatttgtt |
1192 |
T |
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| Q |
141 |
ttcattacttctgctggtcccatatgttttcatgggtatat |
181 |
Q |
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|||||||||||| |||||| |||||||||||||||||||| |
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| T |
1193 |
ttcattacttctattggtcctatatgttttcatgggtatat |
1233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 30865910 - 30865986
Alignment:
| Q |
105 |
tgtgcatgtttgatagtcccagtttggtaatttgttttcattacttctgctggtcccatatgttttcatgggtatat |
181 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
30865910 |
tgtgcatgtttgatagtccctgtttggtaatttgttttcattacttctattggtcctatatgttttcatgggtatat |
30865986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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