View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18386_high_5 (Length: 420)
Name: NF18386_high_5
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18386_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 137 - 398
Target Start/End: Original strand, 41675583 - 41675844
Alignment:
| Q |
137 |
gattgtaattaagagttaactaaagtgagttattagatttatacattggtgaaaaattatatacacatccaagtaaacttcagattaatatttatcatat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41675583 |
gattgtaattaagagttaactaaagtgagttattagatttatacattggtgaaaaattatatacacatccaagtaaacttcagattaatatttatcatat |
41675682 |
T |
|
| Q |
237 |
tctatgtttgattatatatgttgcatatacatatagttctgttttgctctctgtgtgttgtgaaggaaaagggtctactttttgatagagcttaatagct |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41675683 |
tctatgtttgattatatatgttgcatatacatatagttctgttttgctctctgtgtgttgtgaaggaaaagggtctactttttgatagagcttaatagct |
41675782 |
T |
|
| Q |
337 |
tatgctcttcaatggcttcaacttaccattttaagtagttttagatctacattggaaaacgt |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41675783 |
tatgctcttcaatggcttcaacttaccattttaagtagttttagatctacattggaaaacgt |
41675844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41675447 - 41675516
Alignment:
| Q |
1 |
agaacatgtctattgcaatattgcatggattcattgtttagatttcacatgtattgttgcatcttggaca |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41675447 |
agaacatgtctattgcaatattgcatggattcattgtttagatttcacatgtattgttgcatcttggaca |
41675516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University