View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18386_high_6 (Length: 400)

Name: NF18386_high_6
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18386_high_6
NF18386_high_6
[»] chr7 (6 HSPs)
chr7 (188-385)||(44672589-44672786)
chr7 (1-192)||(44673948-44674139)
chr7 (20-282)||(26401699-26401961)
chr7 (23-189)||(8863938-8864104)
chr7 (35-100)||(48768381-48768446)
chr7 (23-108)||(5612532-5612617)
[»] chr8 (5 HSPs)
chr8 (20-282)||(9529544-9529806)
chr8 (16-183)||(36307751-36307918)
chr8 (79-180)||(13813385-13813486)
chr8 (38-91)||(21278019-21278072)
chr8 (23-111)||(25750324-25750412)
[»] chr1 (1 HSPs)
chr1 (23-186)||(38490623-38490786)
[»] chr3 (6 HSPs)
chr3 (23-180)||(44493397-44493554)
chr3 (17-186)||(54563265-54563434)
chr3 (24-137)||(19822666-19822779)
chr3 (59-138)||(4485684-4485763)
chr3 (23-113)||(14505598-14505688)
chr3 (23-111)||(34933498-34933586)
[»] chr5 (2 HSPs)
chr5 (17-189)||(22787800-22787972)
chr5 (41-132)||(19233903-19233994)
[»] chr4 (2 HSPs)
chr4 (47-223)||(12353379-12353555)
chr4 (80-210)||(28858987-28859117)
[»] chr6 (3 HSPs)
chr6 (29-135)||(11605886-11605992)
chr6 (47-132)||(18689563-18689648)
chr6 (23-91)||(15925158-15925226)
[»] chr2 (2 HSPs)
chr2 (36-100)||(11551699-11551763)
chr2 (35-100)||(45013600-45013665)
[»] scaffold0114 (1 HSPs)
scaffold0114 (23-111)||(13160-13248)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 188 - 385
Target Start/End: Complemental strand, 44672786 - 44672589
Alignment:
Q  188 cctaacactgcacgaacccccaatatattagtaatactgtttttcaactcatctgaaacgttcctactgtaaaaaatctcggacttcggtaaactgttag 287  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44672786 cctaacactgcacgaacgcccaatatattagcaatactgtttttcaactcatctgaaacgttcctactgtaaaaaatctcgaacttcggtaaactgttag 44672687  T
Q  288 ctcgccccacacattctatatttgttctttacacctttactttactatttcagtttcacttgttttttcattgttccttgtgttacaatgaatcttgt 385  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44672686 ctcgccccgcacattctatatttgttctttacacctttactttactatttcagtttcacttgttttttcattgttccttgtgttacaatgaatcttgt 44672589  T

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Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 44674139 - 44673948
Alignment:
Q  1 atgaaacaaactcatgtaggagggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |    
T  44674139 atgaaacaaactcatgtaggagggaatggcttgaagaaccgacttgatcataactttgcgccctaccttggacaaacacttgctgctccaagaatttaat 44674040  T
Q  101 ctttgccacacccgatctttaatgtaagcaaaggtggttgttcggttcctcccaatcatagacggcatacctaaatactttccggtgcctaa 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44674039 ctttgccacacccgatctttaatgtaagcaaaggtggttgttcggttcctcctaatcatagacggcatacctaaatactttccggtgcctaa 44673948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 26401961 - 26401699
Alignment:
Q  20 gagggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgatctt 119  Q
    |||||||||||||||||  | || ||||||||||| ||||||||||| ||||||||||||||||| ||||| || || ||||||||||| ||||| || |    
T  26401961 gagggaatggcttgaagggctgacttgatcataacctcgcgccctgctttggacaaacacttgctactccatgagttaattctttgccaaacccggtcct 26401862  T
Q  120 taatgtaagcaaaggtggttgttcggttcctcccaatcatagacggcatacctaaatactttccggtgcctaacactgcacgaacccccaatatattagt 219  Q
    ||||||||| ||| |||  | |||  | | ||||||||||||| ||||| ||||||||||| ||||| ||||| || ||||| ||| | || || || ||    
T  26401861 taatgtaagaaaatgtgtctattctatccatcccaatcatagatggcattcctaaatacttaccggtacctaaaacagcacggaccgctaaaatgtttgt 26401762  T
Q  220 aatactgtttttcaactcatctgaaacgttcctactgtaaaaaatctcggacttcggtaaact 282  Q
    |||||||||||||||| ||||||  || ||||||||||| ||||| || ||||||||||||||    
T  26401761 aatactgtttttcaacgcatctggcacattcctactgtagaaaatttctgacttcggtaaact 26401699  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 8863938 - 8864104
Alignment:
Q  23 ggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgatctttaa 122  Q
    ||||||||||| ||||| || || |||||||  || || | |||||| || |  |||||||| |||||||||||||| ||||||||||| || || ||||    
T  8863938 ggaatggcttgtagaacagacttaatcataaactcccgtcgtgcctttgagaggcacttgctactccaagaatttatcctttgccacacacggtccttaa 8864037  T
Q  123 tgtaagcaaaggtggttgttcggttcctcccaatcatagacggcatacctaaatactttccggtgcc 189  Q
    | |||| ||||||||| || |  ||||  || ||||| || |||||||||| |||||| || |||||    
T  8864038 tataagaaaaggtggtcgtcctattccgtcctatcatggaaggcatacctagatacttaccagtgcc 8864104  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 48768446 - 48768381
Alignment:
Q  35 agaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttatt 100  Q
    ||||| |||||||||||||| |||||||||||||| || ||||| || || |||||||||||||||    
T  48768446 agaacggatttgatcataacctcgcgccctgccttagataaacaattactactccaagaatttatt 48768381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 5612532 - 5612617
Alignment:
Q  23 ggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgcca 108  Q
    ||||| ||||||||||| |||||||||||||| || |  ||||| ||||||||||| || || ||||||  | ||||| |||||||    
T  5612532 ggaatagcttgaagaacagatttgatcataacctctctacctgctttggacaaacatttactactccaactacttattttttgcca 5612617  T

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Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 9529806 - 9529544
Alignment:
Q  20 gagggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgatctt 119  Q
    ||||||||||||||||| || || ||||||||||| |||  || ||||||||||||||||||||| ||||| || || ||||||||||| || ||||| |    
T  9529806 gagggaatggcttgaaggactgacttgatcataacctcgtaccttgccttggacaaacacttgctactccatgagttaattctttgccaaactcgatcct 9529707  T
Q  120 taatgtaagcaaaggtggttgttcggttcctcccaatcatagacggcatacctaaatactttccggtgcctaacactgcacgaacccccaatatattagt 219  Q
    ||||||||||||| ||||||||||  | ||||| ||||||||| |||||  |||||||||| ||||| ||||| || ||||||||| | || || || ||    
T  9529706 taatgtaagcaaatgtggttgttctatccctcctaatcatagatggcatttctaaatacttgccggtacctaaaacagcacgaaccgctaaaatgtttgt 9529607  T
Q  220 aatactgtttttcaactcatctgaaacgttcctactgtaaaaaatctcggacttcggtaaact 282  Q
    |||| ||||||||||  ||||||  || ||||||||||| ||||| ||  |||||||||||||    
T  9529606 aatattgtttttcaatgcatctggcacattcctactgtagaaaatttctaacttcggtaaact 9529544  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 36307751 - 36307918
Alignment:
Q  16 gtaggagggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccga 115  Q
    |||||| ||||||||||| ||||| || || ||||||||||| || ||||| || || | |||||| || ||||||||||| || ||||||||||| |||    
T  36307751 gtaggaaggaatggcttggagaactgactttatcataacttcccgacctgctttagagagacacttactactccaagaattaatcctttgccacacacga 36307850  T
Q  116 tctttaatgtaagcaaaggtggttgttcggttcctcccaatcatagacggcatacctaaatactttcc 183  Q
    || ||||| |||||||| |||| |||||  || |  |||||||| |||||||||||||||||||||||    
T  36307851 tccttaatataagcaaaagtggatgttctattacgaccaatcatggacggcatacctaaatactttcc 36307918  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 13813385 - 13813486
Alignment:
Q  79 cttgctgctccaagaatttattctttgccacacccgatctttaatgtaagcaaaggtggttgttcggttcctcccaatcatagacggcatacctaaatac 178  Q
    ||||||||||||||||||||||||||||||||| || || || || |||||||| ||||  || |  | ||  |||||||| || |||||||||||||||    
T  13813385 cttgctgctccaagaatttattctttgccacacacggtccttgatataagcaaaagtggccgtcctatcccgtccaatcatggaaggcatacctaaatac 13813484  T
Q  179 tt 180  Q
    ||    
T  13813485 tt 13813486  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 21278019 - 21278072
Alignment:
Q  38 accgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaa 91  Q
    |||||||||||||| || || || || |||||||||||||| ||||||||||||    
T  21278019 accgatttgatcattacctcacgaccagccttggacaaacatttgctgctccaa 21278072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 25750324 - 25750412
Alignment:
Q  23 ggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacac 111  Q
    ||||| |||||||| || |||||||||||||| || | ||| || || |||||||| |||||||| |||  | | ||||||||||||||    
T  25750324 ggaatagcttgaaggacagatttgatcataacctccctcccagctttagacaaacatttgctgcttcaattactaattctttgccacac 25750412  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 38490623 - 38490786
Alignment:
Q  23 ggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgatctttaa 122  Q
    ||||||||||||||||| || || ||||||||||| || ||||| || || | |||||| || ||||||||||| ||  |||||||||| ||||| ||||    
T  38490623 ggaatggcttgaagaactgactttatcataacttcccgacctgctttagagagacacttactactccaagaattaatcatttgccacacacgatccttaa 38490722  T
Q  123 tgtaagcaaaggtggttgttcggttcctcccaatcatagacggcatacctaaatactttccggt 186  Q
    | |||||||| ||||||||||  |  |  || ||||| ||||||||||||||||||||||||||    
T  38490723 tataagcaaaagtggttgttctatcacgaccgatcatggacggcatacctaaatactttccggt 38490786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 44493554 - 44493397
Alignment:
Q  23 ggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgatctttaa 122  Q
    ||||| ||||| || || || |||||||||||||| ||||||||||| || |  |||||||| ||||| ||||| ||   |||||||||||| ||| |||    
T  44493554 ggaatagcttggagcacagacttgatcataacttcacgccctgccttagaaaggcacttgctactccacgaattaatatgttgccacacccggtctataa 44493455  T
Q  123 tgtaagcaaaggtggttgttcggttcctcccaatcatagacggcatacctaaatactt 180  Q
    | |||||||| ||||||||||  |  || ||||||||||||||||| |||||||||||    
T  44493454 tataagcaaatgtggttgttctatctctgccaatcatagacggcatgcctaaatactt 44493397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 54563265 - 54563434
Alignment:
Q  17 taggagggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgat 116  Q
    ||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| || |  ||||| || ||||||||||| || | ||||||||| || |    
T  54563265 taggaaggaatggcttggagaaccgacttgatcataacttcacgccctgccttagagaggcacttactactccaagaattaatgcgttgccacacacggt 54563364  T
Q  117 ctttaatgtaagcaaaggtggttgttcggttcctcccaatcatagacggcatacctaaatactttccggt 186  Q
    | ||||| || || || |||||||| |  |  || ||||||||||||| ||| ||||||||||| |||||    
T  54563365 ccttaatataggcgaaagtggttgtcctatctcttccaatcatagacgacattcctaaatacttaccggt 54563434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 19822666 - 19822779
Alignment:
Q  24 gaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgatctttaat 123  Q
    |||| |||||||||||||| |||||||| || ||  |||| ||||| || | ||||||||||||||||||||| ||| |||||||||| |||||||| ||    
T  19822666 gaatagcttgaagaaccgacttgatcatgacctcatgccccgccttagatagacacttgctgctccaagaattaattttttgccacacacgatctttgat 19822765  T
Q  124 gtaagcaaaggtgg 137  Q
    ||| ||||| ||||    
T  19822766 gtaggcaaaagtgg 19822779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 4485684 - 4485763
Alignment:
Q  59 cgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgatctttaatgtaagcaaaggtggt 138  Q
    ||||||||||| || |  |||||||| |||||||||||||| ||||||||||| || || ||||| ||||||||||||||    
T  4485684 cgccctgcctttgagaggcacttgctactccaagaatttatcctttgccacacacggtccttaatataagcaaaggtggt 4485763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 14505598 - 14505688
Alignment:
Q  23 ggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacaccc 113  Q
    ||||| |||||||||||  ||||||||||||| || |  ||||| ||||||||||| || |||||||||  | ||||| ||||||| ||||    
T  14505598 ggaatagcttgaagaacaaatttgatcataacctctctacctgctttggacaaacatttactgctccaaatacttattttttgccataccc 14505688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 34933586 - 34933498
Alignment:
Q  23 ggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacac 111  Q
    ||||| ||||||||||| |||||||||||||| || | ||| || || |||||||| || ||||||||   | | ||||||||||||||    
T  34933586 ggaatagcttgaagaacagatttgatcataacctccctcccggctttagacaaacatttactgctccagctactgattctttgccacac 34933498  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 22787800 - 22787972
Alignment:
Q  17 taggagggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgat 116  Q
    ||||| ||||||||||| |||||||| |||||| ||||||| || |||||||| || |  ||||| || ||||||||||| ||    |||||||| || |    
T  22787800 taggaaggaatggcttggagaaccgacttgatcgtaacttcacgtcctgccttagataggcacttactactccaagaattaatgtgatgccacacacggt 22787899  T
Q  117 ctttaatgtaagcaaaggtggttgttcggttcctcccaatcatagacggcatacctaaatactttccggtgcc 189  Q
    | ||||| |||||||| |||| ||| |  |  || ||||||||||||||||| ||||||||||| || |||||    
T  22787900 ccttaatataagcaaatgtggatgtcctatctcttccaatcatagacggcattcctaaatacttaccagtgcc 22787972  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 19233994 - 19233903
Alignment:
Q  41 gatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgatctttaatgtaagcaaa 132  Q
    ||||| |||||||| || |||||||| || || |||||||| || |||||| |||||||| | ||||| || ||||||||||| ||||||||    
T  19233994 gatttaatcataacctcacgccctgctttagataaacacttactactccaataatttattttctgccaaactcgatctttaatataagcaaa 19233903  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 12353555 - 12353379
Alignment:
Q  47 atcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgatctttaatgtaagcaaaggtggttgttcggt 146  Q
    ||||| || |||||| ||||||| |||||||| || || ||||| ||||| ||| ||||||||||||  ||||||||||| ||||| || |  |||||||    
T  12353555 atcatgacctcgcgctctgccttcgacaaacatttactactccacgaattgattttttgccacaccctgtctttaatgtatgcaaacgttgcagttcggt 12353456  T
Q  147 tcctcccaatcatagacggcatacctaaatactttccggtgcctaacactgcacgaacccccaatatattagtaata 223  Q
     ||| |||||||| || ||||  |||| |||||||||||| || |  || ||||| || ||||| |||| |||||||    
T  12353455 ccctaccaatcattgaaggcaagcctagatactttccggtcccaaggaccgcacgtacacccaaaatatgagtaata 12353379  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 28859117 - 28858987
Alignment:
Q  80 ttgctgctccaagaatttattctttgccacacccgatctttaatgtaagcaaaggtggttgttcggttcctcccaatcatagacggcatacctaaatact 179  Q
    ||||| ||||||||||| ||| ||||||| ||  |||||||||| || ||||| ||||||||||  | ||| || |||||||| |||| |||||| ||||    
T  28859117 ttgctactccaagaattgattttttgccaaacatgatctttaatatatgcaaacgtggttgttctatcccttccgatcatagatggcaaacctaagtact 28859018  T
Q  180 ttccggtgcctaacactgcacgaacccccaa 210  Q
    | || || || |  ||||||||||| |||||    
T  28859017 tacctgttccaagaactgcacgaacacccaa 28858987  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 11605886 - 11605992
Alignment:
Q  29 gcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgatctttaatgtaag 128  Q
    |||||||| |||||||| ||||| ||||| |||||||| ||||| | |||||| || ||||||||||| ||| | |||||||| | ||| || |||||||    
T  11605886 gcttgaaggaccgatttaatcatgacttcacgccctgctttggaaagacacttactactccaagaattgattttatgccacactctatccttgatgtaag 11605985  T
Q  129 caaaggt 135  Q
    |||||||    
T  11605986 caaaggt 11605992  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 18689648 - 18689563
Alignment:
Q  47 atcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacacccgatctttaatgtaagcaaa 132  Q
    ||||| || |||||||||||||| |||||||| ||||| || || ||||| ||| ||||||||||||  |||||||||| ||||||    
T  18689648 atcatgacctcgcgccctgccttcgacaaacatttgctacttcacgaattaattttttgccacaccctgtctttaatgttagcaaa 18689563  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 15925158 - 15925226
Alignment:
Q  23 ggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaa 91  Q
    ||||| |||||||||||  |||||||||||||||| |  ||||| ||||||||||| ||| ||| ||||    
T  15925158 ggaatagcttgaagaacaaatttgatcataacttccctacctgctttggacaaacatttgttgcaccaa 15925226  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 11551763 - 11551699
Alignment:
Q  36 gaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttatt 100  Q
    |||| ||||||||||||||||||||||||||||| || ||||| || || |||||||||||||||    
T  11551763 gaacggatttgatcataacttcgcgccctgccttagataaacatttactactccaagaatttatt 11551699  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 45013665 - 45013600
Alignment:
Q  35 agaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttatt 100  Q
    ||||| |||||||||| ||| |||||| ||||||| || ||||| || || |||||||||||||||    
T  45013665 agaacggatttgatcacaacctcgcgcactgccttagataaacaattactactccaagaatttatt 45013600  T

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Target: scaffold0114 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 13160 - 13248
Alignment:
Q  23 ggaatggcttgaagaaccgatttgatcataacttcgcgccctgccttggacaaacacttgctgctccaagaatttattctttgccacac 111  Q
    ||||| ||||||||||| |||||||||||||| || | ||| || || |||||||| ||||||||||||  | | ||||||||||||||    
T  13160 ggaatagcttgaagaacagatttgatcataacctccctcccagctttagacaaacatttgctgctccaactactaattctttgccacac 13248  T

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