View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18386_low_1 (Length: 943)
Name: NF18386_low_1
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18386_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 888; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 888; E-Value: 0
Query Start/End: Original strand, 11 - 934
Target Start/End: Original strand, 26276254 - 26277177
Alignment:
| Q |
11 |
atcatcaatagagagggtaaccgtgagaatttgctttgctaactctttagacttttgtatcagatacatggggatattccaattaccatccagaatgtaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26276254 |
atcatcaatagagagggtaaccgtgagaatttgctttgctaactctttagacttttgtatcagatacatggggatattccaattaccatccagaatgtaa |
26276353 |
T |
|
| Q |
111 |
tctgctaccttcatgttaagggcagggtgcatgtgcagagggatattaagagattccacaatagattgttctaaccatttatctgtccagaagttgacag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26276354 |
tctgctaccttcatgttaagggcagggtgcatgtgcagagggatattaagagattccacaatagattgttctaaccatttgtctgtccagaagttgacag |
26276453 |
T |
|
| Q |
211 |
tgttcccattacctattgaccatgaggattgctcagcaatcattctgagatggactctcattcccgaccaaactgaagacgctctattgtaggtgatagg |
310 |
Q |
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| T |
26276454 |
tgttcccattacctattgaccatgaggattgctcagcattcattctgagatggactatcattcccgaccaaaatgaagacgctctattgtaggtgatagg |
26276553 |
T |
|
| Q |
311 |
ctttccattctttaagtaccgggttctacacatttgtgtccattgctcgtcagaagtgactaaagaccaacaaagctgcagcagggaggatgaattgacc |
410 |
Q |
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| T |
26276554 |
ctttccattctttaagtaccgggttctacacatttgtgtccattgctcgtcagaagtgactaaagaccaacaaagctgcagcagggaggatgaattgacc |
26276653 |
T |
|
| Q |
411 |
aaccttgggtccttaacagatagacttccttcctcatttggtttacataaatccctccaagccaccgtacaaatttttgcctgagtgatatcaccgctcc |
510 |
Q |
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| T |
26276654 |
agccttgggtccttcacagatagacctccttcctcatttggtttacataaatccctccaagccaccgtacaaatttttgcctgagtgatatcaccgctcc |
26276753 |
T |
|
| Q |
511 |
aaataaaggtctttatcatcttggttaactgcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcaacatactatttatcacagaatt |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26276754 |
aaataaaggtctttatcatcttggttaactgcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcagcatactatttatcacagaatt |
26276853 |
T |
|
| Q |
611 |
gacaagttgtactctccccattatagataacagcaagcctttccaaacagccaatttgactttgattctgtccacaataggtcggaaatgatgagctttt |
710 |
Q |
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| T |
26276854 |
gacaagttgtactctccccattatagataacagcaagcctttccaaacagccaatttgactttgattatgtccacaataggtcggaaatgatgagctttt |
26276953 |
T |
|
| Q |
711 |
gatctgcctttgaagagagggtgcgtgattgtttctaggtgctgcttctgtaaaggccaattggagtcctctgatcatatcttcctgaactgcccggaaa |
810 |
Q |
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| T |
26276954 |
gatctgcctttgaagagagggtgcgtgattgtttctaggtgctgcttctgtaaaggccaattggagtcctctgatcatatcttcctgaactgcccggaaa |
26277053 |
T |
|
| Q |
811 |
cagggatgttgtggagttggttgaaagatgtggcccaacatttggacaattctagtggcgtgaatctgctgtccagttgctttgataagggtagcagatt |
910 |
Q |
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| T |
26277054 |
cagggatgttgtggagttggttgaaagatgtggcccaacatttggacaattctagtggcgtgaatctgctgtccagttgctttgataagggtagcagatt |
26277153 |
T |
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| Q |
911 |
tactcatcaggttctgatctctgc |
934 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
26277154 |
tactcatcaggttctgatctctgc |
26277177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 498 - 657
Target Start/End: Original strand, 39398737 - 39398897
Alignment:
| Q |
498 |
atatcaccgctccaaataaaggtctttatcatcttggttaact-gcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcaacatacta |
596 |
Q |
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||||| |||||| ||||||| |||||||||||||||||| | ||| || |||||| | ||||||| ||||||||||||| ||||| || ||||||||| |
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| T |
39398737 |
atatccccgctctaaataaaattctttatcatcttggttaggttgctgcagaagattggtaggccaaagataaacatgaaacgagtaaagtaacatacta |
39398836 |
T |
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| Q |
597 |
tttatcacagaattgacaagttgtactctccccattatagataacagcaagcctttccaaa |
657 |
Q |
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| T |
39398837 |
ctaatcaccgaattgaccagctgaactcgtcccattatagataacaataagcctttccaaa |
39398897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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