View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18386_low_10 (Length: 344)
Name: NF18386_low_10
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18386_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 33908037 - 33908356
Alignment:
| Q |
18 |
cttgaaacgttggatttgtcgaacaatttgtttaagagttctacgttgccggtgagttggaccaagttgagtaaattgaaggttttttatatgtatgtct |
117 |
Q |
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| T |
33908037 |
cttgaaacgttggatttgtcgaacaatttgtttaagagttctacgttgccggtgagctggaccaagttgagtaaattgaaggtgttttatatgtatgtct |
33908136 |
T |
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| Q |
118 |
gcaatatttttggtgaaatgcctgaatcaatgggagaaatggtttctttggaggatttggatatttcacaaaatgggttgactgggaaaattcctagtgg |
217 |
Q |
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| T |
33908137 |
gcaatctttttggtgaaatgcctgaatcaatgggagaaatggtttctttggaggatttggatatttcccaaaatgggttgactgggaaaattcctagtgg |
33908236 |
T |
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| Q |
218 |
tttgttcatgttgaagaatcttagaagattgttgcttgcaacgaacgatctttctggagagttacctgatgtggttgaagcgttaaacttgactaacatt |
317 |
Q |
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| T |
33908237 |
tttgttcatgttgaagaatcttagaagattgttgcttgcaacgaacgatctttctggagagttacctgatgtggttgaagcgttaaacttgactaacatc |
33908336 |
T |
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| Q |
318 |
gagcttacgcagaataatct |
337 |
Q |
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| T |
33908337 |
gagcttacgcagaataatct |
33908356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 24793193 - 24793027
Alignment:
| Q |
72 |
agttggaccaagttgagtaaattgaaggttttttatatgtatgtctgcaatatttttggtgaaatgcctgaatcaatgggagaaatggtttctttggagg |
171 |
Q |
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| T |
24793193 |
agtttgaccaagttgaacaaattgaaggttctttatgtttatggctctaacttgattggtgaaatacctgaaaaaattggagatatggtttctttggaga |
24793094 |
T |
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| Q |
172 |
atttggatatttcacaaaatgggttgactgggaaaattcctagtggtttgttcatgttgaagaatct |
238 |
Q |
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| T |
24793093 |
cgttggatatgtcaagaaatggtttaactggtgaaattcctagtggtttgttcatgctgaagaatct |
24793027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 250
Target Start/End: Original strand, 33882895 - 33883043
Alignment:
| Q |
89 |
taaattgaaggttttttatatgtatgtctgcaatatttttggtgaaatgcctgaatcaatgggagaaatggtttctttggaggatttggatatttcacaa |
188 |
Q |
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| T |
33882895 |
taaattgaagttgttttatatgcatgactgcaacctgtttggtgaaatgcctgaaacaatag--gaaatggtttc---------tttggatatttcacaa |
33882983 |
T |
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| Q |
189 |
aatgggttgactgggaaaattcctagtggtttgttcatgttgaagaatcttagaagattgtt |
250 |
Q |
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| T |
33882984 |
aa--cgttgagtgaaaaaattcctagcggtttgttcatgctgaagaatcacagcagattgtt |
33883043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 33915449 - 33915485
Alignment:
| Q |
265 |
atctttctggagagttacctgatgtggttgaagcgtt |
301 |
Q |
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| T |
33915449 |
atctttctggagagatacctgatgtggttgaagcgtt |
33915485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 24792988 - 24792955
Alignment:
| Q |
205 |
aaattcctagtggtttgttcatgttgaagaatct |
238 |
Q |
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| T |
24792988 |
aaattcctagtggtttgttcatgctgaagaatct |
24792955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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