View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18386_low_12 (Length: 304)
Name: NF18386_low_12
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18386_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 35 - 219
Target Start/End: Complemental strand, 40465374 - 40465190
Alignment:
| Q |
35 |
ctcttgtagcatttttatgttatagtttaaatttacaaacttatctatcaatatacacctggcaatctggggttgtttatccttctgaaccattttgtct |
134 |
Q |
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| T |
40465374 |
ctcttgtagcatttttatgctatagttcaaatttacaaacttatctatcaatatacacctggcaatctggggttgtttatccttctgaaccattttgtct |
40465275 |
T |
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| Q |
135 |
ttctctccatgttccatattacaccctttagattctcattggcattatccnnnnnnnatattctttatcatcattgaggaagtaa |
219 |
Q |
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| T |
40465274 |
ttctctccatgttccatattacaccctttagattctcattggcattatcctttttttatattctttatcatcattgaggaagtaa |
40465190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 290
Target Start/End: Complemental strand, 40465150 - 40465119
Alignment:
| Q |
259 |
cctatcataaatttaagcttggccatataaat |
290 |
Q |
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| T |
40465150 |
cctatcataaatttaagcttggccatataaat |
40465119 |
T |
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