View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18386_low_15 (Length: 254)
Name: NF18386_low_15
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18386_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 44628466 - 44628240
Alignment:
| Q |
10 |
aggagcagagaatcagaatgaaatttgaagacaaaaaaggtcaagttaaattctataggggattatgtctccctagctttaactagaaagtgactattta |
109 |
Q |
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| T |
44628466 |
aggagcagaaaatcagaatgaaatttgaagacaaaaaaggtcaagttaaattctataggggattatgtctccctagctttaactagaaagtgactattta |
44628367 |
T |
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| Q |
110 |
tcagcattacgctttcagcatttagcaatttgacgataaacactaacaccatcaaagcatactgattcaatctaaatacatgtgtagtgatcaaacattt |
209 |
Q |
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| T |
44628366 |
tcagcattacgctttcagcatttagcaatttgacgataaacactaacaccattaaagcatactgattcaatctaaatacatgtgtagtgatcaaaggttt |
44628267 |
T |
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| Q |
210 |
cttgttccactgcatttgattccataa |
236 |
Q |
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| T |
44628266 |
cttgttccactgcatttgattccataa |
44628240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 34597432 - 34597499
Alignment:
| Q |
167 |
catactgattcaatctaaatacatgtgtagtgatcaaa--catttcttgttccactgcatttgattcc |
232 |
Q |
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| T |
34597432 |
cataccgattcaatctaaaaacaagtgtagttatcacaagcatgttttgttccactgcatttgattcc |
34597499 |
T |
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