View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18386_low_18 (Length: 242)
Name: NF18386_low_18
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18386_low_18 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 132370 - 132139
Alignment:
| Q |
15 |
tatgatatagctagtatgtataagcacttatataataagtgtttgattaaactgtttatcttaacatggtctaagtgtgtgtttggttacgcatttcctg |
114 |
Q |
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| T |
132370 |
tatgatatagctagtatgtataagcacttatatgataagtttttgattaaattgtttaacttaacatggcctaagtgtgtgtttggttacgcatttcctg |
132271 |
T |
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| Q |
115 |
tcacttttttatgtaaattttgaccgggatttttataagctctaaattgaagctttcactttaccttgcttcaattttaaccgggatttttcacttt--- |
211 |
Q |
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| T |
132270 |
tcacttttttatgtaaattttgactgggatttttataagctctaaattgtagctttaactttaccttgcttcaattttgaccgggatttttcactttacc |
132171 |
T |
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| Q |
212 |
-acctcaatttaggcctctgcgggttctactc |
242 |
Q |
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| T |
132170 |
tacctcaatttaggcctctgcaggttctactc |
132139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 18232851 - 18233066
Alignment:
| Q |
15 |
tatgatatagctagtatgtataagcacttatataataagtgtttgattaaactgtttatcttaacatggtctaagtgtgtgtttggttacgcatttcctg |
114 |
Q |
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| T |
18232851 |
tatgatatagctagtatgtataagcacttatatgataagtgtttgattaaactgtttatcttaacatggcctacgtgtgtgtttggttacgcatttcctg |
18232950 |
T |
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| Q |
115 |
tcacttttttatgtaaattttgaccgggatttttataagctctaaattgaagctttcactttaccttgcttcaattttaaccgggatttttcactttacc |
214 |
Q |
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| T |
18232951 |
tcacttttt------------gaccgggatttttataagctctaaattgaagctttcactttaccttgcttcaattttgaccgggatttttcactttacc |
18233038 |
T |
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| Q |
215 |
tcaatttaggcctctgcgggttctactc |
242 |
Q |
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| T |
18233039 |
tcaatttaggcctctgcggattctactc |
18233066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 3169373 - 3169413
Alignment:
| Q |
34 |
ataagcacttatataataagtgtttgattaaactgtttatc |
74 |
Q |
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| T |
3169373 |
ataagcacttatatgataagtgtttcattaaaccgtttatc |
3169413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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