View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18386_low_20 (Length: 212)
Name: NF18386_low_20
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18386_low_20 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 26332286 - 26332497
Alignment:
| Q |
1 |
ctccagaataactagtttgtgatgtttgttcaaattcttcttctcccacagaagctgaagaatcttcttgtatggagacatgatccatcgcggattgatc |
100 |
Q |
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| T |
26332286 |
ctccagaataactagtttgtgatgtttgttcaaattcttcttctcccacagaagctgaagaatcttcttgtatggagacatgatccatcgcggattgatc |
26332385 |
T |
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| Q |
101 |
cgaaattccggagttagtgcatgatgaagtaggttgagagtttgttcttctattagactgaggcttagggtggttatgagttcccttatatacaatttca |
200 |
Q |
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| T |
26332386 |
cgaaattccggagttagtgcatgatgaagtaggttgagagtttgttcttctattagactgaggcttagggtggttatgagttcccttatatacaatttca |
26332485 |
T |
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| Q |
201 |
gtaatctgtcca |
212 |
Q |
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| T |
26332486 |
gtaatctgtcca |
26332497 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 3669374 - 3669319
Alignment:
| Q |
157 |
actgaggcttagggtggttatgagttcccttatatacaatttcagtaatctgtcca |
212 |
Q |
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| T |
3669374 |
actgaggcttaggatggttatgacttcctttatatactatttgagtaatttgtcca |
3669319 |
T |
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