View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18386_low_3 (Length: 694)
Name: NF18386_low_3
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18386_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 626; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 19 - 684
Target Start/End: Complemental strand, 27162171 - 27161506
Alignment:
| Q |
19 |
catccgtgtctttttgatccaatttttctcttgtgtaggtttattgagtggttaggttgttgctgttgtggtggaaacattgagaaagtgaagttgaaag |
118 |
Q |
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| T |
27162171 |
catccgtgtctttttgatccaatttttctcttgtgtaggtttattgagtggttaggttgttgctgctgtggtggaaacattgagaaagtgaagttgaaag |
27162072 |
T |
|
| Q |
119 |
aggaaatttgtgaagaaaataatttggcttccatttgtagggataccctttttcatcatccagttaaaaccaagacttgtgaagctcttgccaagcttcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27162071 |
aggaaatttgtgaagaaaataatttggcttccatttgtagggataccctttttcatcatcgagttaaaaccaagacttgtgaagctcttgccaagcttcc |
27161972 |
T |
|
| Q |
219 |
ttttacaatgtctctttattctaggtcttactctttctctctttaattgtttgcattgcattgaatatcaattttctatatttaatcattgaaaggaaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27161971 |
ttttacaatgtctctttattctaggtcttactctttctctctttaattgtttgcattgcattgaatatcaattttctatatttaatcattgaaaggaaag |
27161872 |
T |
|
| Q |
319 |
actaaagaaacgtatttgttctacagtgtccatgcagaggtagcaatatcacaacaaccaagatggcttatccatgaggtaaattaatttgtttgtgtag |
418 |
Q |
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| T |
27161871 |
actaaagaaaagtatttgttctacagtgtccatgcagaggtagcaatatcacaacaaccaagatggcttatccatgaggtaaattaatttgtgtgtgtag |
27161772 |
T |
|
| Q |
419 |
aaatcagcttaattaagaacttatatcataagtgtttatcatataattgatttttaactgttaatgttttgacaggactcagttggaactcaagttttaa |
518 |
Q |
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| T |
27161771 |
aaatcagcttaattaagaacttatatcataagtgtttatcatataattgatttttaactgttaatgttttgataggactcagttggaactcaagttttaa |
27161672 |
T |
|
| Q |
519 |
tccctattattggcggtcttgttgagcttttcattgcaaagcatgtaagatacaaatcttggtacctattggattaccctctgttttaaaatgattgaaa |
618 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27161671 |
tccctattattggcggtcttgttgagcttttcactgcaaagcatgtaagatacaaatcttggtacttattggattaccctctgttttaaaatgattgaaa |
27161572 |
T |
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| Q |
619 |
attttaaaattaatcgagtgtttatctttctcagattcccgaagatatcaatatcatgaagttcat |
684 |
Q |
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| T |
27161571 |
attttaaaattaatcaagtgtttatcttcctcagattcccgaagatataaatatcatgaagttcat |
27161506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 426 - 470
Target Start/End: Original strand, 1117242 - 1117286
Alignment:
| Q |
426 |
cttaattaagaacttatatcataagtgtttatcatataattgatt |
470 |
Q |
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| T |
1117242 |
cttaattaagtacttatatcattagtgcttatcatataagtgatt |
1117286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 4684285 - 4684245
Alignment:
| Q |
424 |
agcttaattaagaacttatatcataagtgtttatcatataa |
464 |
Q |
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| T |
4684285 |
agcttaattaagcacttctatcataagtgtttatcatataa |
4684245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Complemental strand, 11393543 - 11393502
Alignment:
| Q |
423 |
cagcttaattaagaacttatatcataagtgtttatcatataa |
464 |
Q |
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| T |
11393543 |
cagcttaattaagcacttatagcacaagtgtttatcatataa |
11393502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Complemental strand, 11410204 - 11410163
Alignment:
| Q |
423 |
cagcttaattaagaacttatatcataagtgtttatcatataa |
464 |
Q |
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||||||||||||| ||||||| || ||||||||||||||||| |
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| T |
11410204 |
cagcttaattaagcacttatagcacaagtgtttatcatataa |
11410163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 424 - 472
Target Start/End: Original strand, 35459804 - 35459852
Alignment:
| Q |
424 |
agcttaattaagaacttatatcataagtgtttatcatataattgatttt |
472 |
Q |
| |
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||||||||| || |||||| |||||||||||||||||||| ||||||| |
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| T |
35459804 |
agcttaattcagctcttatagcataagtgtttatcatataagtgatttt |
35459852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 423 - 463
Target Start/End: Original strand, 41022129 - 41022169
Alignment:
| Q |
423 |
cagcttaattaagaacttatatcataagtgtttatcatata |
463 |
Q |
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|||||||||||||| |||||| |||||||||| |||||||| |
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| T |
41022129 |
cagcttaattaagagcttatagcataagtgttcatcatata |
41022169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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