View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18386_low_4 (Length: 533)
Name: NF18386_low_4
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18386_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 34666874 - 34667135
Alignment:
| Q |
8 |
gacatcatcaagagcaaaagtgatgttcccaaatgtttataggtggtgagtgggaccaatggtagggaagtttatgctgtaaattgtgttggaaatcgga |
107 |
Q |
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| T |
34666874 |
gacataataaagagcaaaagcgatgttcccaaatgtttataggtggtgagtgggaccaatggtagggaagttaatgctgtaaattgtgttggaaatagga |
34666973 |
T |
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| Q |
108 |
agctatagggaatgaaatagtactctagaagtgaatgtttgtttttctgtccctaaacaaagacctatacacagtgtacttataagtattaaataaatga |
207 |
Q |
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| T |
34666974 |
agctatagggaatgaaatagtactctagaagtgaatgtttgtttttctgtccctaatcaaagacctatacacagtgtacttataagtattaaataaatga |
34667073 |
T |
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| Q |
208 |
atcactaatgtgcatttagatttgattggaagtgaaaactagacaagacaaacctgacaaca |
269 |
Q |
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| T |
34667074 |
atcactaatgtgcatttagatttgattggaagtgaaaactagacaagacaaacctgacaaca |
34667135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 348 - 518
Target Start/End: Original strand, 34667219 - 34667389
Alignment:
| Q |
348 |
tctgataatcatcttcatgtatagttagatacataaataaggaaataaccttatagttagtttcaaatggaaatggcaatgtcttttagtttaaggaata |
447 |
Q |
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| T |
34667219 |
tctgataatcatcttcatgtatagttagatacataaataaggaaataaccatatagttagtttcaaatggaaatggcaatgtcttttagtttaaggaata |
34667318 |
T |
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| Q |
448 |
agcttaagactctttgtgcttacggggatggttggtcttatgccattttctggcgctttcatcaaaggaat |
518 |
Q |
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| T |
34667319 |
agcttaagactctttgtgcttacggggatggttggtcttatgccattttctggcgctttcatcaaaggaat |
34667389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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