View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18386_low_5 (Length: 506)
Name: NF18386_low_5
Description: NF18386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18386_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 21 - 499
Target Start/End: Original strand, 278283 - 278757
Alignment:
| Q |
21 |
ggtctttccatagattattccaaattcactccatgtacaacacaatctgatgaacaagttctagctagcaaaaatttgcaggcccgaaaaacggaacgtg |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
278283 |
ggtctttccatagattattccaaattcactccatgtacaacacaatctgatgaacaagttctagctaacaaaaatttgcaggcccgaaaaacggaacgtg |
278382 |
T |
|
| Q |
121 |
aaatactagtttctgaaccagaagaggataaaaccacaagcaaagaaaattcaggaaaaagatctaggagctcaaatgaggtaacaaacagaagccagaa |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278383 |
aaatactagtttctgaaccagaagaggataaaaccacaagcacagaaaattcaggaaaaagatctaggagctcaaatgaggtaacaaacagaag------ |
278476 |
T |
|
| Q |
221 |
ggcccatgaatcttctaaatgtttcccttactactg---ttttttatttcttctttccaactgatatgcatttccttttccatcacggtttatggtttgg |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
278477 |
-gcccatgaatcttctaaatgtctcccttactactgctgttttttatttcttctttccaactgatatgcatttccttttccaccacggtttatggtttgg |
278575 |
T |
|
| Q |
318 |
attttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataa |
417 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278576 |
attttgattttctgaaattctccttgtcatttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataa |
278675 |
T |
|
| Q |
418 |
gcactgaagagaatacaagtactggttctcaggatcagaacttaagcggttattgttcagaggatgagtccaattcttctca |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
278676 |
gcactgaagagaatacaagtactggttctcaggatcagaccttaagcggttattgttcagaggatgagtccaattcttctca |
278757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 347 - 495
Target Start/End: Complemental strand, 24653551 - 24653403
Alignment:
| Q |
347 |
tttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttct |
446 |
Q |
| |
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|||||| |||||||||| |||||| |||||||||||||||||||||||| || || |||| |||| |||||||| ||||||||||||| |||||||| |
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| T |
24653551 |
tttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttct |
24653452 |
T |
|
| Q |
447 |
caggatcagaacttaagcggttattgttcagaggatgagtccaattctt |
495 |
Q |
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|||||||||| ||||||| || ||||||||| |||| |||||||||| |
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| T |
24653451 |
caggatcagaccttaagcaattgttgttcagataatgaatccaattctt |
24653403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 346 - 464
Target Start/End: Complemental strand, 24685277 - 24685159
Alignment:
| Q |
346 |
atttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttc |
445 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| | ||||| || || |||| || ||||||||| |||||||||||| || ||||||| |
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| T |
24685277 |
atttgattttataggtccccaagaacaagaggaatgttaaatgcatgaagaatatgagatgtggttttataagcacagaagagaatacaggtcctggttc |
24685178 |
T |
|
| Q |
446 |
tcaggatcagaacttaagc |
464 |
Q |
| |
|
||| ||||||| ||||||| |
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|
| T |
24685177 |
tcaagatcagaccttaagc |
24685159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 347 - 456
Target Start/End: Complemental strand, 24682535 - 24682423
Alignment:
| Q |
347 |
tttgatattataggtcccaaagaacaagaggaat---gttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggt |
443 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||| |||||||||||||||| || || |||| |||| |||||||| |||||||||||||| ||||| |
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| T |
24682535 |
tttgattttataggtccgaaagaaagagaggaataatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttaagagaatacaagtgctggt |
24682436 |
T |
|
| Q |
444 |
tctcaggatcaga |
456 |
Q |
| |
|
||||||||||||| |
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|
| T |
24682435 |
tctcaggatcaga |
24682423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 24685478 - 24685374
Alignment:
| Q |
113 |
ggaacgtgaaatactagtttctgaaccagaagaggataaaaccacaagcaaagaaaattcaggaaaaagatctaggagctcaaatgaggta-acaaacag |
211 |
Q |
| |
|
||||| ||| ||||||||||||| |||| ||| |||||||||| ||||| ||| ||||||||||||||| |||||||||| | ||||||| ||||||| |
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| T |
24685478 |
ggaacatgacatactagtttctggaccacgagatgataaaaccagaagcagagagaattcaggaaaaagacctaggagctcgactgaggtagacaaacaa |
24685379 |
T |
|
| Q |
212 |
aagcc |
216 |
Q |
| |
|
||||| |
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|
| T |
24685378 |
aagcc |
24685374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 463
Target Start/End: Complemental strand, 24631957 - 24631760
Alignment:
| Q |
264 |
tttcttct-ttccaactgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtc |
362 |
Q |
| |
|
|||||||| |||||| ||||||| ||||| ||||||| ||| |||||||| || ||| |||||| ||| ||| ||| || ||||||| |||| ||| |
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|
| T |
24631957 |
tttcttctcttccaagtgatatggatttctttttccaacacaatttatggtctgt-tttcgattttgtgagattatcccggttatttgattttattagtc |
24631859 |
T |
|
| Q |
363 |
ccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaacttaa |
462 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| || || | || |||||||| ||| |||| ||||||||| ||||||| | |||||||| ||||| |
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| T |
24631858 |
ccaaagaacaagaggaa--ttaaatgtatgaagaatatgagatttggttctataatcacaaaagaaaatacaagtcctggttcgccggatcagaccttaa |
24631761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 37 - 203
Target Start/End: Complemental strand, 41800363 - 41800197
Alignment:
| Q |
37 |
attccaaattcactccatgtacaacacaatctgatgaa--caagttctagctagcaaaaatttgcaggcccgaaaaacggaacgtgaaatactagtttct |
134 |
Q |
| |
|
|||||||||||||||||| |||||| || | || || |||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||| |
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| T |
41800363 |
attccaaattcactccatatacaaccgaacccgacgagagcaagttctagctgccaagaatttgcaggcccaaaa---ggaacgtgaaatactagtttct |
41800267 |
T |
|
| Q |
135 |
gaaccagaagaggataaaaccacaagcaaagaaaattcagga-aaaagatctaggagctcaaatgaggta |
203 |
Q |
| |
|
|||| |||||| |||||||| | ||||| ||||||||||||| ||||||| |||||||||||| |||||| |
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|
| T |
41800266 |
gaactagaagaagataaaacaagaagcacagaaaattcaggaaaaaagatgtaggagctcaaacgaggta |
41800197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 283 - 455
Target Start/End: Complemental strand, 41806256 - 41806086
Alignment:
| Q |
283 |
atgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagaggaatgt |
382 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||| |||||| ||| ||| ||| ||| ||||||| ||||||||||| ||||||||| ||||| |
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|
| T |
41806256 |
atgcatttccttttcctgcaaagtttatggtttgtgttt-gattttgtgagattctccttgttatttgattttataggtcccgcggaacaagag-aatgt |
41806159 |
T |
|
| Q |
383 |
taaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcag |
455 |
Q |
| |
|
||| ||||| |||| | || | ||||||||||||||||||||||||||| || ||||||||||| ||||| |
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|
| T |
41806158 |
taactgtagaaagaatgtaagacgggcttctataagcactgaagagaatacacgtcctggttctcagcatcag |
41806086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 405 - 456
Target Start/End: Complemental strand, 41800031 - 41799980
Alignment:
| Q |
405 |
tgtgcttctataagcactgaagagaatacaagtactggttctcaggatcaga |
456 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
41800031 |
tgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcaga |
41799980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 382
Target Start/End: Complemental strand, 41800138 - 41800036
Alignment:
| Q |
279 |
tgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagagga |
378 |
Q |
| |
|
|||| ||||||||||||||| ||| |||||||||||| ||| |||||| | | ||| ||| || ||||||| ||||||||||| ||||||||| ||| |
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| T |
41800138 |
tgatgtgcatttccttttcctgcacagtttatggtttgtgttt-gattttgttagattctcctggttatttgattttataggtcccgaagaacaagggga |
41800040 |
T |
|
| Q |
379 |
atgt |
382 |
Q |
| |
|
|||| |
|
|
| T |
41800039 |
atgt |
41800036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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