View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18387_high_1 (Length: 881)

Name: NF18387_high_1
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18387_high_1
NF18387_high_1
[»] chr4 (1 HSPs)
chr4 (18-873)||(43986778-43987645)


Alignment Details
Target: chr4 (Bit Score: 750; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 18 - 873
Target Start/End: Complemental strand, 43987645 - 43986778
Alignment:
Q  18 ttattgtggtaatttcttatgttaaaacccatattttgttatgttctagagcaacaatttattttcttgttcatg-----------agattccctaataa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||           ||||||||||||||    
T  43987645 ttattgtggtaatttcttatgttaaaacccatattttgttatgttctagagcaaaaattgattttcttgttcttgtgttattcatcagattccctaataa 43987546  T
Q  107 aaagatcgttgaacccgtaaacacacgcaattaaaattcatgtacctttctttctaaattattcaggtcagcagcttgatagacagcaacatcaaatttc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43987545 aaagatcgttgaacccgtaaacacacgcaattaaaattcatgtacctttctttctaaattattcaggtcagaagcttgatagacagcaacatcaaatttc 43987446  T
Q  207 cagatacacacgtcaatacacaataactccacctgtaatgtcggccaagagggacccataatccatcatcatttcaaatcttttcctcactcctccttcc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43987445 cagatacacacgtcaatacacaataactccacctgtaatgtcggccaagagggacccataatccatcatcatttcaaatcttttcctcactcctccttcc 43987346  T
Q  307 ttcc----cccaattacatttacaaatccacaaaaacagataaataaatttagttacagcaaccgtaatcctccacgtgtccataacgaatcttccccag 402  Q
    ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43987345 ttccttcccccaattacatttacaaatccacaaaaacagataaataaatttagttacagcaaccgtaatcctccacgtgtccataacgaatcttccccag 43987246  T
Q  403 ttcctactcatttcctctaaatcctagtcaaccaaatatcttaacacgtgtccactatattccacagtcagcaacaacacacgctcatgtccttctcttc 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43987245 ttcctactcatttcctctaaatcctagtcaaccaaatatcttaacacgtgtccactatattccacagtcagcaacaacacacgctcatgtccttctcttc 43987146  T
Q  503 ctcctataatataaccttaccttacactatccaaattcaactcaactcaaaacaaaacaactatagtatagtgtattattattaatttgtttgtttcaat 602  Q
    ||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | |  |||||| |||||||||||||||||    
T  43987145 ct---ataatataaccttaccttacactatccaagttcaactcaactcaaaacaaaacaactatagtgtattattatattatgaatttgtttgtttcaat 43987049  T
Q  603 taaataatgactagttctcatcttactaatcaaagggatcgccgtatcctatcattcccggcggttcacccttgcgaaaacatatctcccacaacactca 702  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43987048 tcaataatgactagtactcatcttactaatcaaagggatcgccgtatcctatcattcccggcggttcacccttgcgaaaacatatctcccacaacactca 43986949  T
Q  703 tcacttctctaatcaatctttcacaaactatatccaatttccaacctcaaatattcccaacacaaaaacgtaacgcaagagaaactatacgtcaaattac 802  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43986948 tcacttctctaatcaatctttcacaaactatatccaatttccaacctcaaatattcccaacacaaaaacgtaacgcaagagaaactatacgtcaaattac 43986849  T
Q  803 tataatttcaattttcctcaacgaaattaaagaccatggttccattattcctaactcaattatcctatgct 873  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43986848 tataatttcaattttcctcaacgaaattaaagaccatggttccattattcctaactcaattatcctatgct 43986778  T

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