View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18387_high_9 (Length: 469)
Name: NF18387_high_9
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18387_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 202 - 455
Target Start/End: Original strand, 6361085 - 6361337
Alignment:
| Q |
202 |
atctgcttgcaagtgtgctaacattaatattgtgagctagctgcagtgtgctatgatatcattgaagtgtgcaggtgctaacttaagtgtgaatatctgt |
301 |
Q |
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| T |
6361085 |
atctgcttgcaagtgtgctaacattaatattgtgagctagctgcagtgtgctatgatatcattgaagtgtgcaggtgctaact-aagtgtaaatatctgt |
6361183 |
T |
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| Q |
302 |
acattaattacaaataatatttgttaggattatccaatatatcaagtagaacctctccatacatgctgttacttggtataactccaaatcgttgcatcga |
401 |
Q |
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| T |
6361184 |
acattaattacaaataatatttgttaggattatccaatatatcaagtagaacctctacatacatgttgttacttggtataactccaaattgttgcatcga |
6361283 |
T |
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| Q |
402 |
aggcacatggaaacaatgaagtgtatagttcattcatgcaatcgttgatgtttc |
455 |
Q |
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| T |
6361284 |
aggcacatggaaacaatgaagtgtatagttcattcatgcaatcgttgatgtttc |
6361337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 6360868 - 6361059
Alignment:
| Q |
10 |
aaatgaagggagtaagccactggatcaaaattgctgcaaaaacctatgcggctgagaccatataacaggaacaatatttcaggtttgagcgaattgtatt |
109 |
Q |
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| T |
6360868 |
aaatgaagggagtaagccactggatcaaaattgctgcaaaaacctatgcggctgagaccatataacaggaacaatatttcaggtttgaacgaattgtatt |
6360967 |
T |
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| Q |
110 |
gctaaacatacggttacatatattctgccttccaatactataatcatggagatatcttacctactctagctgcaagtgagttggccgtgagt |
201 |
Q |
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| T |
6360968 |
gctaaacataaggttacatatattctgccttccaatactataatcatggagatatcttacctactctagctgcaagtgagttggccgtgagt |
6361059 |
T |
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