View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18387_low_10 (Length: 412)
Name: NF18387_low_10
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18387_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 17779692 - 17779302
Alignment:
| Q |
7 |
tagattatacttatgtaaaaataaaaggtacaaattaagtgtaacacttggttattgaataactagagggaacatcaataggacaaaatgaagtatccca |
106 |
Q |
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| T |
17779692 |
tagattctacttatgtaaaaataaaaggtacaaattaagtgtaacacttggttgttgaataactagagggaacatcaataggacaaaatgaagtatccca |
17779593 |
T |
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| Q |
107 |
aagcaaatttgacttccatgcatcaccaatattgaaattcatcaattcttgttcatcaatacgaggcacattcacattaacattataaggtaccttaacc |
206 |
Q |
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| T |
17779592 |
aagcaaatttgacttccatgcatcaccaatattgaaattcatcaattcttgttcatcaatacgaggcacattcatattaacattataaggtaccttaacc |
17779493 |
T |
|
| Q |
207 |
aatgcattattatcatattggtaattaccaaatggtaatgagtagtcactaaattgctcttgcaacccaccattcatgaaatttgtagttgtaacctcat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17779492 |
aatgcattattatcatattggtaattaccaaatggtaatgagtagtcactaaattgctcttgcaacccaccattcatgaaatttgtagttgtaacctcat |
17779393 |
T |
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| Q |
307 |
cacatgtcttgctaaagtcaccaagcattgaggatgatgatgacatattcaacaacattgatgaaacatccattgtagatttggtaataat |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17779392 |
cacatgtcttgctaaagtcaccaagcattgaggatgatgatgacatattcaacaacattgatgaaacatccattgtagatttggaaataat |
17779302 |
T |
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