View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18387_low_11 (Length: 395)
Name: NF18387_low_11
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18387_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 45459219 - 45458848
Alignment:
| Q |
8 |
ggcaagtgagaagctatagtttcttttatccaaacacacaaatcgaccaatcgactcaacataaagggacatttgaaagaactttaacaatcaaacgaac |
107 |
Q |
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| T |
45459219 |
ggcaagtgagaagctatagtttcttttatccaaacacacaaatcgaccaatcgactcaacataaagggacatttgaaagaactttaacaatcaaacgaac |
45459120 |
T |
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| Q |
108 |
ataaagtacttacatttttgtagaacatttgagacggaatcccgagtatgttgtgacgatgaaactggttataaacaacaaagcaatcagacacttgaag |
207 |
Q |
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| T |
45459119 |
ataaagtacttacatttttgtagaacatttgagacggaatcccgagtatgttgtgacgatgaaactggttataaacaacaaagcaatcagacacttgaag |
45459020 |
T |
|
| Q |
208 |
tagcaaataagtattgatatttccttcagaaaagaaaatgtcatggaagcaaacgaacatcgaaagaatttaataacaagaaaagcagtaaacatattgg |
307 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459019 |
tagcaaataagtattgatatgtccttcagaaaagaaaatgtcatggaagcaaacgaacatcgaaagaatttaataacaagaaaagcagtaaacatattgg |
45458920 |
T |
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| Q |
308 |
ttattttaaatcaattgttccttaaccagtatccttggtatagctaaaataataaatataggttttatttgt |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45458919 |
ttattttaaatcaattgttccttaaccagtatccttggtatagctaaaataataaatataggttttatttgt |
45458848 |
T |
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