View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18387_low_12 (Length: 393)
Name: NF18387_low_12
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18387_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 15505652 - 15505350
Alignment:
| Q |
7 |
ggaacacagaacccaattgcaaaaaggaataatattggcattttcataatcctcttgagtaaaaacaggggcaaagcnnnnnnntttaagttaaggagac |
106 |
Q |
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| T |
15505652 |
ggaacccaaaacccaattgcaaaaaggaataatattggcattttcatcatcctcttgagtaaaaacaggggcaaagcaaaaaatttaaagttaaggagac |
15505553 |
T |
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| Q |
107 |
tgagacagagaacattttttataacgaataaggtacataatttgatt-nnnnnnnttaaatacaaaagatatataagaaccctgagctaannnnnnnnnn |
205 |
Q |
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| T |
15505552 |
tgagacagagaacattttttttaacgaataaggtacataatttgattaaaaaaaattaaatacaaaagatatataagaaccctgagctaatatttttttt |
15505453 |
T |
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| Q |
206 |
nnnnnncaaataaaaaatagtagtgcatatattctagggttaaatattcctnnnnnnnntgttc-taggattaaatatatttttagcaaatgatgaattc |
304 |
Q |
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||||||||||||| ||||||||||||| |||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15505452 |
gtttttcaaataaaaaatattagtgcatatattgtaggattaaatattcctaaaataaatgttcttaggattaaatatatttttagcaaatgatgaattc |
15505353 |
T |
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| Q |
305 |
ctt |
307 |
Q |
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||| |
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| T |
15505352 |
ctt |
15505350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 15505352 - 15505318
Alignment:
| Q |
345 |
cttctaggtatatgacgatggattcttgttgtatt |
379 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
15505352 |
cttctaggtatatgacgatggattcttgttgtatt |
15505318 |
T |
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