View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18387_low_13 (Length: 363)

Name: NF18387_low_13
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18387_low_13
NF18387_low_13
[»] chr6 (1 HSPs)
chr6 (19-320)||(34237331-34237631)
[»] chr4 (3 HSPs)
chr4 (261-320)||(6686454-6686513)
chr4 (284-320)||(6683244-6683280)
chr4 (284-320)||(8532510-8532546)
[»] chr8 (2 HSPs)
chr8 (268-320)||(38061302-38061354)
chr8 (268-320)||(13274523-13274575)
[»] chr7 (2 HSPs)
chr7 (268-320)||(24509631-24509683)
chr7 (284-320)||(2432922-2432958)
[»] chr2 (1 HSPs)
chr2 (261-320)||(13437745-13437803)
[»] chr1 (2 HSPs)
chr1 (319-352)||(964681-964714)
chr1 (222-315)||(48713623-48713715)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 34237631 - 34237331
Alignment:
Q  19 actcacaccaaaaagacacacattcttttgcttggtaatgccttattttttcctaaagaaaacggttactagcttgtgcatattaatat------gaatt 112  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||      |||||    
T  34237631 actcacaccaaaaagacaca--ttcttttgcttggtaatggcttattttttcctaaagaaaacggttactagcttgtgcatattaatattaatatgaatt 34237534  T
Q  113 tagtggccatgctatagtgcgtattcacacacctatccaatcctttcaactttcttaaaatcattttactcctcatgagnnnnnnnggatttcatcttcc 212  Q
    |||||||||||||||||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  34237533 tagtggccatgctatagtgcctattcacacacctatcc-----tttcaactttcttaaaatcattttactcctcatgagtttttt-ggatttcatcttcc 34237440  T
Q  213 t-gattatatattcctcttgtcagttctgtatcctcggtctttattggaaatggtctgttaaatcctaggaaattagtgtataattacgcggaaaatcct 311  Q
    | |||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34237439 ttgattatatattcctcttgtcagttctgtatcctcggtccttatcgaaaagggtctgttaaatcctaggaaattagtgtataattacgcggaaaatcct 34237340  T
Q  312 taaggacag 320  Q
    |||||||||    
T  34237339 taaggacag 34237331  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 6686454 - 6686513
Alignment:
Q  261 aatggtctgttaaatcctaggaaattagtgtataattacgcggaaaatccttaaggacag 320  Q
    |||||||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||    
T  6686454 aatggtctgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacag 6686513  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 6683244 - 6683280
Alignment:
Q  284 attagtgtataattacgcggaaaatccttaaggacag 320  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  6683244 attagcgtataattacgcggaaaattcttaaggacag 6683280  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 8532546 - 8532510
Alignment:
Q  284 attagtgtataattacgcggaaaatccttaaggacag 320  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  8532546 attagcgtataattacgcggaaaattcttaaggacag 8532510  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 38061302 - 38061354
Alignment:
Q  268 tgttaaatcctaggaaattagtgtataattacgcggaaaatccttaaggacag 320  Q
    |||||||||| |||  ||||| |||||||||||||||||||||||||||||||    
T  38061302 tgttaaatccaaggggattagcgtataattacgcggaaaatccttaaggacag 38061354  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 13274575 - 13274523
Alignment:
Q  268 tgttaaatcctaggaaattagtgtataattacgcggaaaatccttaaggacag 320  Q
    ||||| ||||||||  ||||  |||||||||||||||||||| ||||||||||    
T  13274575 tgttatatcctaggggattaacgtataattacgcggaaaatctttaaggacag 13274523  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 24509683 - 24509631
Alignment:
Q  268 tgttaaatcctaggaaattagtgtataattacgcggaaaatccttaaggacag 320  Q
    ||||||||||| ||  ||||| ||||||||||||||||||| |||||||||||    
T  24509683 tgttaaatcctgggcgattagcgtataattacgcggaaaattcttaaggacag 24509631  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 2432922 - 2432958
Alignment:
Q  284 attagtgtataattacgcggaaaatccttaaggacag 320  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  2432922 attagcgtataattacgtggaaaatccttaaggacag 2432958  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 320
Target Start/End: Complemental strand, 13437803 - 13437745
Alignment:
Q  261 aatggtctgttaaatcct-aggaaattagtgtataattacgcggaaaatccttaaggacag 320  Q
    |||||||||||||||||| ||||  |||| ||||||||||| ||||||||||||| |||||    
T  13437803 aatggtctgttaaatcctgagga--ttagcgtataattacgtggaaaatccttaaagacag 13437745  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 964681 - 964714
Alignment:
Q  319 agcacgtctcagactattttcacagtttgttcat 352  Q
    ||||||||||||||||||||||| ||||||||||    
T  964681 agcacgtctcagactattttcaccgtttgttcat 964714  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 315
Target Start/End: Complemental strand, 48713715 - 48713623
Alignment:
Q  222 attcctcttgtcagttctgtatcctcggtctttattggaaatggtctgttaaatcctaggaaattagtgtataattacgcggaaaatccttaag 315  Q
    |||| ||||||||||| ||||||||||||  |||| || || ||||||||||||||| ||   |||| ||||||| |||  |||||||||||||    
T  48713715 attcttcttgtcagttatgtatcctcggttcttatcgggaagggtctgttaaatcct-ggggtttagcgtataatcacgtagaaaatccttaag 48713623  T

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