View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18387_low_15 (Length: 316)
Name: NF18387_low_15
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18387_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 302
Target Start/End: Original strand, 428636 - 428912
Alignment:
| Q |
22 |
gttaaagatggactcaaattcaagttagaatatattttcgcagtaacagaaataaannnnnnnatttctatgatattcatacaagagannnnnnnnagta |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
428636 |
gttaaagatggactcaaattcaagttagaatatattttcgcagtaacagaaataaaaatttt-atttctatgatattcatacaagagattttttttagta |
428734 |
T |
|
| Q |
122 |
gaaaattcataaannnnnnnnnnnntaaggaaataaaaaattaaaatggaatcgtgaaatttcttatcaaccaaaa-aatcataagcatcgtttcaggga |
220 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
428735 |
gaaaattcataaaagagagag----taaggaaataaaaaaataaaatggaatcgtgaaatttcttatcaaccaaaaaaatcataagcatcgtttcaggga |
428830 |
T |
|
| Q |
221 |
atagtgaatagacattaatagtgaggaacttgcttccttattttgtgatttcagatctttgaaccattatccttttcctttg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
428831 |
atagtgaatagacattaatagtgaggaacttacttccttattttgtgatttcagatctttgaaccattatccttttcctttg |
428912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 30640674 - 30640605
Alignment:
| Q |
233 |
cattaatagtgaggaacttgcttccttattttgtgatttcagatctttgaaccattatccttttcctttg |
302 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30640674 |
cattaatagtgaggaacttacttccttattttgtgatttcagatctttgaaccattatccttttcctttg |
30640605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University