View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18387_low_16 (Length: 314)
Name: NF18387_low_16
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18387_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 17779104 - 17778819
Alignment:
| Q |
13 |
aaaattgggtgatttcttgatttttggttagcatattagaggttcttgtttcagatagggaagaaacccaagagtgagacaaagctctttgagccgtaga |
112 |
Q |
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| T |
17779104 |
aaaattgggtgatttcttgatttttggttagcatattagaggttcttgtttcagatagggaagaaacccaagagtgagacaaagctctttgagccgtaga |
17779005 |
T |
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| Q |
113 |
atttgttttcttgaatattctacagatagcccatgattcctgcatgttaaaagacaagttaaatatgtccataaattatatttacaaccacaaacactta |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17779004 |
atttgttttcttgaatattctacagatagcccatgattcctgcatgttaaaagacaagttaaagatgtccataaattatatttacaaccacaaacactta |
17778905 |
T |
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| Q |
213 |
aaatcgaagttt-nnnnnnnnnnnnnnnntcatagacatcatactgtaaagatttttgtagcggtcaatcaattataaccgccaaa |
297 |
Q |
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||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17778904 |
aaaccgaagtttaaaaaaaataaaaaaaatcatagacatcataccgtaaagatttttgtagcggtcaatcaattataaccgccaaa |
17778819 |
T |
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