View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18387_low_17 (Length: 302)
Name: NF18387_low_17
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18387_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 22996749 - 22996503
Alignment:
| Q |
8 |
aaagagtaaat-ctagtcattttatcaacataacaaagcaaaagttattaacaatatgaaataaatctgatgtgagaggagttaatgatgaatataaact |
106 |
Q |
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| T |
22996749 |
aaagagtaaattctagtcattttatcaacataacaaagcaaaagttattaacattacaaaataaatctgatgtgagaggagttaataatgaatataaact |
22996650 |
T |
|
| Q |
107 |
cgctagtgtactgtcctatatgctaaaaattcaaataacttattcagatgatgactcataagagaataaatgtgctaaaaatttcaatgcatatcatgta |
206 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| |||| |||||||||||| ||||||||||| |
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| T |
22996649 |
cgctagtgtactgtcctatatgctaaaaatccaaataacttatatagatgatgactc--aagagaataattgtgataaaaatttcaa--catatcatgta |
22996554 |
T |
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| Q |
207 |
atgcagctgatctaagattcaaaccatctcgttaaaatgaaatagagctat |
257 |
Q |
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| T |
22996553 |
atgcagctgatctaagattcaaaccgtctcgttaaaatgaaatagagctat |
22996503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 924083 - 923980
Alignment:
| Q |
1 |
ttaggttaaagagtaaatctagtcattttatcaacataacaaagcaaaagttattaacaatatgaaataaatctgatgtgagaggagttaatgatgaata |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
924083 |
ttaggttaaagagtaaatccagtcattttatcaacataacaaagcaaaagttattaacaatatgaaataaatctgatgtgagaggagttaatgatgaata |
923984 |
T |
|
| Q |
101 |
taaa |
104 |
Q |
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|||| |
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|
| T |
923983 |
taaa |
923980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 22964829 - 22964946
Alignment:
| Q |
18 |
tctagtcattttatcaacataacaaagcaaaagttattaacaatatgaaataaatctgatgtgagaggagttaatgatgaatataaactcgctagtgtac |
117 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||| || ||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
22964829 |
tctagttattttatcaacataacaaagcaaa-gttattaacattacgaaataaatttgatatgagaggagttaataatgaatataaactcgctagtgtac |
22964927 |
T |
|
| Q |
118 |
tgtcctatatgctaaaaat |
136 |
Q |
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||||||||||||||||||| |
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| T |
22964928 |
tgtcctatatgctaaaaat |
22964946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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