View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18387_low_19 (Length: 260)
Name: NF18387_low_19
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18387_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 7969065 - 7969294
Alignment:
| Q |
15 |
atcaagcaaagcaagaaggaggtgatactaatatggaaaatattgaaaaaatttcaaaggcaccttcaagtacatcaagacaatggtcaacatcaagttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7969065 |
atcaagcaaagcaagaaggaggtgatactagtatggaaaatattgaaaaaatttcaaaggcaccttcaagtacatcaagacaatggtcaacatcaagttt |
7969164 |
T |
|
| Q |
115 |
aagaaatccaagaattgtgagagtatcaagaacatttggaggcaaagataggcatagcaaagtttgtacaataagagggttaagagatagaaggataagg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7969165 |
aagaaatccaagaattgtgagagtatcaagaacatttggaggcaaagataggcatagcaaagtttgtacaataagagggttaagagatagaaggataagg |
7969264 |
T |
|
| Q |
215 |
ctttcagttccaacagcaattcaattatat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7969265 |
ctttcagttccaacagcaattcaattatat |
7969294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 4516186 - 4516304
Alignment:
| Q |
120 |
atccaagaattgtgagagtatcaagaacatttggaggcaaagataggcatagcaaagtttgtacaataagagggttaagagatagaaggataaggctttc |
219 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||| || || ||||| ||||||||||| || ||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
4516186 |
atccaagaattgtaagagtatcaagagcttttggtggaaaggatagacatagcaaagtatgcacaataagaggattgagagatagaagagtaaggctttc |
4516285 |
T |
|
| Q |
220 |
agttccaacagcaattcaa |
238 |
Q |
| |
|
||| |||||||| |||||| |
|
|
| T |
4516286 |
agtaccaacagctattcaa |
4516304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 45588921 - 45589045
Alignment:
| Q |
113 |
ttaagaaatccaagaattgtgagagtatcaagaacatttggaggcaaagataggcatagcaaagtttgtacaataagagggttaagagatagaaggataa |
212 |
Q |
| |
|
||||||||||||||||| |||||||| ||| | | || ||||| ||||| || || ||||||||||| ||||| ||||| |||||||| | ||||| | |
|
|
| T |
45588921 |
ttaagaaatccaagaatagtgagagtgtcacgttctttaggaggaaaagacagacacagcaaagtttgcacaattagaggattaagagaccgtaggatta |
45589020 |
T |
|
| Q |
213 |
ggctttcagttccaacagcaattca |
237 |
Q |
| |
|
|| | || || |||||||||||||| |
|
|
| T |
45589021 |
ggttgtctgtaccaacagcaattca |
45589045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 5012051 - 5012130
Alignment:
| Q |
158 |
aaagataggcatagcaaagtttgtacaataagagggttaagagatagaaggataaggctttcagttccaacagcaattca |
237 |
Q |
| |
|
|||||||| ||||||||||| | ||||||| ||| |||||||||||||| ||||||||||| | | |||||||||||| |
|
|
| T |
5012051 |
aaagatagacatagcaaagtatacacaataaaaggactaagagatagaagggtaaggctttcaatccaaacagcaattca |
5012130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University