View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18387_low_21 (Length: 235)
Name: NF18387_low_21
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18387_low_21 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36518647 - 36518865
Alignment:
| Q |
1 |
aaaacttttcgcaacagcacttatgccaacgacatgcaacgatannnnnnncgctgggaaaaacacatttcgcagcaacgttgcatttttctcaacgaca |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36518647 |
aaaacttttcgcaacagaacttatgccaacgacatgcaacgatatttttttcgctgggaaaaacacatttcgcagcaacgttgcatttttctcaacgaca |
36518746 |
T |
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| Q |
101 |
tatatatcgccgtcaaaaaccttttttcttgtagtggtaccacattcatcgtcgttctccaatctatcttggatgagatatttcattctctcaactttaa |
200 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36518747 |
tatat--cgctgtcaaaaaccttttttcttgtagtggtaccacattcatcgtcgttctccaatctatcttggatgagatatttcattctctcaactttaa |
36518844 |
T |
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| Q |
201 |
gatttgattgtccaaatatct |
221 |
Q |
| |
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|||| |||||||||||||||| |
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| T |
36518845 |
gattcgattgtccaaatatct |
36518865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 16178473 - 16178342
Alignment:
| Q |
1 |
aaaacttttcgcaacagcacttatgccaacgacatgcaacgatannnnnnncgctgggaaaaacacatttcgcagcaacgttgcatttttctcaacgaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| || |||||||||||||||| |
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| T |
16178473 |
aaaacttttcgcaacagcacttatgccaacgacatgcagcgatatttttttcgctgggaaaaacatatttcgcagcaacttttcatttttctcaacgac- |
16178375 |
T |
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| Q |
101 |
tatatatcgccgtcaaaaaccttttttcttgtag |
134 |
Q |
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| T |
16178374 |
-acatatcgctgtcaaaaaccttttttcttgtag |
16178342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 171460 - 171592
Alignment:
| Q |
1 |
aaaacttttcgcaacagcacttatgccaacgacatgcaacgatannnnnnncgctgggaaaaacacatttcgcagcaacgttgcatttttctcaacgaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| || |||||||||||||||| |
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| T |
171460 |
aaaacttttcgcaacagcacttatgccaacgacatgcaacgatatttttttcgctggaaaaaacatatttcgcagcaacttttcatttttctcaacgac- |
171558 |
T |
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| Q |
101 |
tatatatcgccgtcaaaaaccttttttcttgtagt |
135 |
Q |
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| || |||| || ||||||||||||||||||||| |
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| T |
171559 |
-acatgtcgctgtaaaaaaccttttttcttgtagt |
171592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 176973 - 177105
Alignment:
| Q |
1 |
aaaacttttcgcaacagcacttatgccaacgacatgcaacgatannnnnnncgctgggaaaaacacatttcgcagcaacgttgcatttttctcaacgaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| || |||||||||||||||| |
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| T |
176973 |
aaaacttttcgcaacagcacttatgccaacgacatgcagcgatatttttttcgctgggaaaaacatatttcgcagcaacttttcatttttctcaacgac- |
177071 |
T |
|
| Q |
101 |
tatatatcgccgtcaaaaaccttttttcttgtagt |
135 |
Q |
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| || |||| || ||||||||||||||||||||| |
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| T |
177072 |
-acatgtcgctgtaaaaaaccttttttcttgtagt |
177105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 76638 - 76504
Alignment:
| Q |
1 |
aaaacttttcgcaacagcacttatgccaacgacatgcaa-cgatannnnnnncgctgggaaaaacacatttcgcagcaacgttgcatttttctcaacgac |
99 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||| |||||||| ||||||| || |||||||||||||| |
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| T |
76638 |
aaaacttttcgcaaccacacttatgccaacaacatgcaggcgatatttttttcgctgggaaaagcacatttcacagcaacttttcatttttctcaacg-- |
76541 |
T |
|
| Q |
100 |
atatatatcgccgtcaaaaaccttttttcttgtagtg |
136 |
Q |
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|||||| |||| |||||||||||| |||||||||||| |
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| T |
76540 |
atatatgtcgctgtcaaaaaccttctttcttgtagtg |
76504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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