View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18387_low_22 (Length: 209)
Name: NF18387_low_22
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18387_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 3550728 - 3550538
Alignment:
| Q |
5 |
acacttgcaaaccaacaatgctaacttatgtttttagggtatatgttaaagatactaaaaatataaattatgcattggaattgtgttaatttatttatca |
104 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3550728 |
acacttgccaaccaacaatgttaacttatgtttttagggtatatgttaaagatactacaaatataaattatgcattggaattgtgttaatttatttatca |
3550629 |
T |
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| Q |
105 |
acatttataaattagtttttcataataaatatttgctattaatgtaattcttaaaatgtgtcttaagatcacaacttagaatgaccctttt |
195 |
Q |
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| T |
3550628 |
acatttataaattagtttttcataataaatatttgctattaatggaattcttaaaatgtgtcttaagatcacaacttagcatgaccctttt |
3550538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 18618597 - 18618516
Alignment:
| Q |
114 |
aattagtttttcataataaatatttgctattaatgtaattcttaaaatgtgtcttaagatcacaacttagaatgaccctttt |
195 |
Q |
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| T |
18618597 |
aattaatttttcataataaatatttgctattaatagaattcttaatatgtgccttaagagcataagttagtatgaccctttt |
18618516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 16560771 - 16560728
Alignment:
| Q |
114 |
aattagtttttcataataaatatttgctattaatgtaattctta |
157 |
Q |
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| T |
16560771 |
aattaatttttcataacaaatatttgctattaatggaattctta |
16560728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 7763940 - 7763827
Alignment:
| Q |
47 |
atgttaaagatactaaaaatataaattatgcattggaa-ttgtgttaatttatttatcaacat-ttataaattagtttttcataataaatatttgctatt |
144 |
Q |
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||||||| ||||| ||||||| |||| ||||||||||| |||||| |||||||| ||| | ||| |||||| |||||||||||||||||||| |||| |
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| T |
7763940 |
atgttaaggataccaaaaatagaaataatgcattggaaattgtgtctatttatttctcatgaagttaaaaattaatttttcataataaatatttgttatt |
7763841 |
T |
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| Q |
145 |
aatgtaattcttaa |
158 |
Q |
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|||| ||||||||| |
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| T |
7763840 |
aatggaattcttaa |
7763827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 13854146 - 13854204
Alignment:
| Q |
113 |
aaattagtttttcataataaatatttgctattaatgtaattcttaaaatgtgtcttaag |
171 |
Q |
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| T |
13854146 |
aaattaatttttcataataaatatttgctattaatagaattcttaacatgtgccttaag |
13854204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 39825939 - 39825987
Alignment:
| Q |
121 |
ttttcataataaatatttgctattaatgtaattcttaaaatgtgtctta |
169 |
Q |
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|
| T |
39825939 |
tttttataataaatatttgctattaatgaaattcttaacatgtgtctta |
39825987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 36186552 - 36186495
Alignment:
| Q |
114 |
aattagtttttcataataaatatttgctattaatgtaattcttaaaatgtgtcttaag |
171 |
Q |
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| T |
36186552 |
aattaatttctcataataaatatttgctattaattgaattcttaatatgtgtcgtaag |
36186495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 39734646 - 39734570
Alignment:
| Q |
113 |
aaattagtttttcataataaatatttgctattaatgtaattcttaaaatgtgtcttaagatcacaacttagaatgacc |
190 |
Q |
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| T |
39734646 |
aaattaattttttataataaatatttactattaataaaattcttaacatgtttc-taagaacacaagttagcatgacc |
39734570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 31475331 - 31475400
Alignment:
| Q |
120 |
tttttcataataaatatttgctattaatgtaattcttaaaatgtgtcttaagatcacaacttagaatgac |
189 |
Q |
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| T |
31475331 |
tttttaataataaatatatgttattaatagaattcttaacatgtgtcttaagggcacaagttaaaatgac |
31475400 |
T |
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