View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18387_low_3 (Length: 653)
Name: NF18387_low_3
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18387_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 636
Target Start/End: Original strand, 3826963 - 3827602
Alignment:
| Q |
1 |
ttagtgacggaaaaaataaaattcgtcacaagaaattagaaatgttctctccttgaatgccactattttttaaaacgacggatgtttgtannnnnnnnnn |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3826963 |
ttagtgacggaaaaaataaaatttgtcacaagaaattagaaatgttctctccttgaatgtcactattttttaaaacgacggatgtttgtattttttattt |
3827062 |
T |
|
| Q |
101 |
nnnnnnaacggcaaaatttattaataaccaattcact----atgactaacagagaccgacaagacataatgttagtattttgtcactgatttaatttatc |
196 |
Q |
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|
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3827063 |
ttttttaacggcaaaatttattaataaccaattcattgcacatgactaacagagaccgacaagacataatgttagtattttgtcactgatttaatttatc |
3827162 |
T |
|
| Q |
197 |
tgatgcaggaggcgatttcagcgccggatcagctaaaggaaggaacaaactacataaagaaattgcagatcaacctggagaaaatgaaggaaaagaagaa |
296 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3827163 |
tgatgcaggaggcgatttcagtgccggatcagctaaaggaagcaacaaactacataaagaaattgcagatcaacctggagaaaatgaaggaaaagaagaa |
3827262 |
T |
|
| Q |
297 |
ttttctactaggaattcaaaggcaaaatgtgaatttgaatagaaaccagaagatgggattaaagtctccaaaaattaagatacaacaaattggtttagtc |
396 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3827263 |
ttttctactaggaattcaaaggccaaatgtgaatttgaatagaaaccagaagatgggattaaagtctccaaaaattaagatacaacaaattggtttagtc |
3827362 |
T |
|
| Q |
397 |
ttagaggttgttctaataactggattggagtctcagtttttgttcagtgaaacccttcgagttcttcatgaagaaggagttgatattgttaatgctagtt |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3827363 |
ttagaggttgttctaataactggattggagtctcagtttttgttcagcgaaacctttcgagttcttcatgaagaaggagttgatattgttaatgctagtt |
3827462 |
T |
|
| Q |
497 |
ataaggtcaatgaagattctgttttccattcaatacactgccaggtaaatcataaattgttacttctaattgatctttatttcctttaatatgaaatcaa |
596 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3827463 |
ataaggtcaatgaagattctgttttccattcaatacactgccaggtaaatcataaattgttacttctaattgatctttatttcctttaatatgaaatcaa |
3827562 |
T |
|
| Q |
597 |
gtgcaagaaggcctttaacacatggcctcaaagttagggg |
636 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3827563 |
gtgcaagaaggcctttaacacatggcctcaaagttagggg |
3827602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 1954984 - 1954956
Alignment:
| Q |
3 |
agtgacggaaaaaataaaattcgtcacaa |
31 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
1954984 |
agtgacggaaaaaataaaattcgtcacaa |
1954956 |
T |
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