View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18387_low_4 (Length: 620)
Name: NF18387_low_4
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18387_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 17 - 611
Target Start/End: Original strand, 37183100 - 37183695
Alignment:
| Q |
17 |
atgaaataggaagtagcttgcgtgttaagcaaccgtccactatatataaaggtgaagagaagccatcattcattataacccaacccttatagcaaaatct |
116 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37183100 |
atgaaataggaaatagcttgcgttttaagcaaccgtccactatatataaaggtgaagagaagccatcattcattataacccaacccttatagcaaaatct |
37183199 |
T |
|
| Q |
117 |
cgttacattttcctcaaaaccctatctctcatcataatcatcatcatggcagccacaaatgtatccaa--atacgatttcgccttacaaacagaaactaa |
214 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37183200 |
cgttacagtttccttaaaaccctatctctcatcataatcatcatcatggcagccacaaatgtatccaaggatacgatttcgccttacaaacagaaactaa |
37183299 |
T |
|
| Q |
215 |
gatgaaattctttgagaaagagctttaatggcatcatcaacaaggtcatgaccatggaatatatcacagacattgttcccgaattgttttctcaaaactt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37183300 |
gatgaaattctttgagaaagagctttaatggcatcatcaacaaggtcatgaccatggaatatatcacagacattgttcccgaattgttttctcaaaactt |
37183399 |
T |
|
| Q |
315 |
gatccgcgggagaggtctcttctgcagatcccttatgaactcacagatggcctatccg-agtataccattgagtttgccgcgcttgttgcggtcgtaaat |
413 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37183400 |
gatccgcgggagagggctcttctgcagatcccttatga--tcacagatggcctatccggagtataccattgagtttgccgcgcttgttgcggtcgtaaat |
37183497 |
T |
|
| Q |
414 |
tccaagtttcctgaagtcggtaatcttttactcagaagaattgttttgcaattcaaaagggcttatcataggaatgacaagcctcatcagttacatgcta |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37183498 |
tccaagtttcctgaagtcggtaatcttttactcagaagaattgttttgcaattcaaatgggcttatcataggaatgacaagcctcatcagttacatgcta |
37183597 |
T |
|
| Q |
514 |
ctgttaagtttatagcacatttggtgaaacagctagttgcacatgagattattgctttggtaatactcacggttttgcttgataaccctattgatgat |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37183598 |
ctgttaagtttatagcacatttggtgaaacagctagttgcacatgagattattgctttggaaatactcacggttttgcttgataaccctattgatgat |
37183695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 37085353 - 37085177
Alignment:
| Q |
19 |
gaaataggaagtagcttgcgtgttaagcaaccgtccactatatata--aaggtgaagagaagccatcattcattataa---------cccaacccttata |
107 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||| | ||||||||||| ||||||||||||| | ||||||||||||| || |||||| ||| |
|
|
| T |
37085353 |
gaaataggaagcagcgtgcatgttaagcaacattgcactatatatataaaggtgaagagaatcattcattcattataagtttataacccaaaccctaata |
37085254 |
T |
|
| Q |
108 |
gcaaaatctcgttacattttcctcaaaaccctatc-----tctcatcataatcatcatcatggcagccacaaatgtat |
180 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37085253 |
gcaaattctcgttaccgtttccttaaaaccctaaccctgctctcatcataatcatcatcatggcag-cacaaatgtat |
37085177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 37076447 - 37076525
Alignment:
| Q |
17 |
atgaaataggaagtagcttgcgtgttaagcaaccgtccactatatataaaggtgaagagaagccatcattcattataac |
95 |
Q |
| |
|
||||||||||||||||| || || ||||||||| || || ||| |||||||| |||||||||||||| ||| ||||| |
|
|
| T |
37076447 |
atgaaataggaagtagcgtgtgtattaagcaacggtgaaccataaataaaggtcgagagaagccatcatccataataac |
37076525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University