View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18387_low_6 (Length: 538)

Name: NF18387_low_6
Description: NF18387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18387_low_6
NF18387_low_6
[»] chr6 (3 HSPs)
chr6 (298-532)||(24040710-24040944)
chr6 (176-298)||(24040560-24040681)
chr6 (326-530)||(24014181-24014385)
[»] chr4 (9 HSPs)
chr4 (301-532)||(35106972-35107203)
chr4 (326-532)||(35072682-35072888)
chr4 (321-530)||(35097796-35098005)
chr4 (321-530)||(35098085-35098294)
chr4 (321-530)||(36296450-36296659)
chr4 (327-522)||(36940478-36940673)
chr4 (323-522)||(36961351-36961551)
chr4 (325-440)||(36935858-36935974)
chr4 (333-451)||(36953644-36953768)
[»] chr5 (2 HSPs)
chr5 (365-461)||(34919141-34919237)
chr5 (345-454)||(26579147-26579256)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 298 - 532
Target Start/End: Original strand, 24040710 - 24040944
Alignment:
Q  298 acagagtaactaagcttgttctgagtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacac 397  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24040710 acagagtaactaaatttgttccgagtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaatac 24040809  T
Q  398 cattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattg 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040810 cattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattg 24040909  T
Q  498 atcattcttatcttctttttcaacgttcatctcac 532  Q
    |||||||||||||||||||||||||||| ||||||    
T  24040910 atcattcttatcttctttttcaacgttcctctcac 24040944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 24040560 - 24040681
Alignment:
Q  176 attaagaagatcaacaactatttaaagcgatttacttattttatttaggcattaacattgcacatacatcatcatgtctcttgcacaagcaaacatcaca 275  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040560 attaagaagatcaacaactatttaaagcgatttacttattt-atttaggcattaacattgcacatacatcatcatgtctcttgcacaagcaaacatcaca 24040658  T
Q  276 caaaaggtaaacattacagacga 298  Q
    |||||||||||||||||||||||    
T  24040659 caaaaggtaaacattacagacga 24040681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 326 - 530
Target Start/End: Original strand, 24014181 - 24014385
Alignment:
Q  326 aaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 425  Q
    |||||||||| || |||| ||| || | ||| |||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  24014181 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 24014280  T
Q  426 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 525  Q
    |||||||||||| || || || || || ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||    
T  24014281 cattttcgcattttcgggcaacctgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaacattc 24014380  T
Q  526 atctc 530  Q
     ||||    
T  24014381 ctctc 24014385  T

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Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 301 - 532
Target Start/End: Complemental strand, 35107203 - 35106972
Alignment:
Q  301 gagtaactaagcttgttctgagtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccat 400  Q
    ||||||| ||||||||||||||||||||||||||| |||||||  || |||| ||||||||| |  |||||||||||||||||||||| |||||||||||    
T  35107203 gagtaacaaagcttgttctgagtttaaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccat 35107104  T
Q  401 tctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatc 500  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35107103 tctccatagcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatc 35107004  T
Q  501 attcttatcttctttttcaacgttcatctcac 532  Q
    |||||||||||||||||||| |||| ||||||    
T  35107003 attcttatcttctttttcaaagttcctctcac 35106972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 326 - 532
Target Start/End: Original strand, 35072682 - 35072888
Alignment:
Q  326 aaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc 425  Q
    |||||||||| || |||| ||| || | ||| |||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  35072682 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 35072781  T
Q  426 cattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttc 525  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35072782 cattttcgcattctctggttatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttc 35072881  T
Q  526 atctcac 532  Q
     ||||||    
T  35072882 ctctcac 35072888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 321 - 530
Target Start/End: Complemental strand, 35098005 - 35097796
Alignment:
Q  321 agtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcact 420  Q
    |||| |||||||||| ||||||| ||| || | ||||||||| |  ||||| || || ||||| ||||||||||||||||||||||||||||||||||||    
T  35098005 agttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcact 35097906  T
Q  421 tgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaa 520  Q
    || ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  35097905 tggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaa 35097806  T
Q  521 cgttcatctc 530  Q
    | ||| ||||    
T  35097805 cattcctctc 35097796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 321 - 530
Target Start/End: Complemental strand, 35098294 - 35098085
Alignment:
Q  321 agtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcact 420  Q
    |||| |||||||||| ||||||| ||| || | ||||||||| |  ||||| || || ||||| ||||||||||||||||||||||||||||||||||||    
T  35098294 agttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcact 35098195  T
Q  421 tgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaa 520  Q
    || ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  35098194 tggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaa 35098095  T
Q  521 cgttcatctc 530  Q
    | ||| ||||    
T  35098094 cattcctctc 35098085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 321 - 530
Target Start/End: Original strand, 36296450 - 36296659
Alignment:
Q  321 agtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcact 420  Q
    |||| |||||||||| ||||| | ||| || | ||| |||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||     
T  36296450 agttcaaccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcacc 36296549  T
Q  421 tgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaa 520  Q
    |||||||| || ||||| || || ||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |  ||||| |||||||| ||||    
T  36296550 tgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccattggttgttcttgtcttctttctcaa 36296649  T
Q  521 cgttcatctc 530  Q
    ||||| ||||    
T  36296650 cgttcctctc 36296659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 327 - 522
Target Start/End: Original strand, 36940478 - 36940673
Alignment:
Q  327 accagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatcc 426  Q
    |||||||||||||||||| || |||| | | ||||| |  ||||  ||||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  36940478 accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc 36940577  T
Q  427 attttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacg 522  Q
    ||||| |||||||| || ||||| || ||||||||||| || |||||||||||||||||  ||||||||||||| |||||||||||||| ||||||    
T  36940578 attttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcttctttctcaacg 36940673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 323 - 522
Target Start/End: Complemental strand, 36961551 - 36961351
Alignment:
Q  323 tttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgca-gctttcactt 421  Q
    ||||| ||||||||||||||||||| |||  ||| || || |||||||||||||| | ||| |||||||||||||||||||||  ||   || ||||| |    
T  36961551 tttaatcagagatatcaatggtcttaactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacct 36961452  T
Q  422 gatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaac 521  Q
    ||||||| || ||||||||||  ||||||||| ||||||||||||| ||||||||| ||||||| | |||||||| ||  |||||||||||||| |||||    
T  36961451 gatccatcttagcattctctgccaatctaaacttcctcatgaatttcccactgctaagctccacgcaatgccattcattgttcttatcttctttctcaac 36961352  T
Q  522 g 522  Q
    |    
T  36961351 g 36961351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 325 - 440
Target Start/End: Original strand, 36935858 - 36935974
Alignment:
Q  325 taaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctcc-attgcagctttcacttga 423  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||| |  || || || ||||||||||||||||||||| ||||||||||||||||||    
T  36935858 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttga 36935957  T
Q  424 tccattttcgcattctc 440  Q
    |||||||| ||||||||    
T  36935958 tccattttagcattctc 36935974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 333 - 451
Target Start/End: Original strand, 36953644 - 36953768
Alignment:
Q  333 gatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattc--------tccattgcagctttcacttgat 424  Q
    |||||||||| ||||||||| |||||||| ||| ||||| ||||| ||||| ||||  ||||||||||||        ||||||||||||||||||||||    
T  36953644 gatatcaatgttcttcacttcaggcttctaaacctcttctttaggaacagttacag--agaacaccattctccatcagtccattgcagctttcacttgat 36953741  T
Q  425 ccattttcgcattctctggtaatctaa 451  Q
    || |||| ||||| || || |||||||    
T  36953742 ccgttttagcattgtcaggcaatctaa 36953768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 461
Target Start/End: Complemental strand, 34919237 - 34919141
Alignment:
Q  365 cttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatctaaacctcctcat 461  Q
    ||||||||||||| ||||| ||||| ||||| |||||||||||  ||||||| || |||||||||||  ||||||| || || ||||||||||||||    
T  34919237 cttcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggcaacctaaacctcctcat 34919141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 26579256 - 26579147
Alignment:
Q  345 cttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctctggt 444  Q
    |||||| | |||||||||||| ||  ||||||| ||| | ||||| || ||||||||||||||  |||||||||| | |||||  || |||||||| ||     
T  26579256 cttcacatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggc 26579157  T
Q  445 aatctaaacc 454  Q
    || |||||||    
T  26579156 aacctaaacc 26579147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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