View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18388_high_10 (Length: 386)
Name: NF18388_high_10
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18388_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 33 - 386
Target Start/End: Original strand, 803349 - 803674
Alignment:
| Q |
33 |
gcatagcaaagtctttaccatttgacaaagtcaagttnnnnnnncatatgagagatctactacgtcattaggaactgagattaattctcaattggagagt |
132 |
Q |
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| T |
803349 |
gcatagcatagtctttaccatttgacaaagtcaagttaaaaaaacatatgagagatctactacgtcattaggaactgagatt----ctcaattggagagt |
803444 |
T |
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| Q |
133 |
gggatatctaaaattaatttcagtttatatattgtgtctattcaaataagtgtcctcggattaaggtgtctgctcacccaaaacttgttgaatttggttc |
232 |
Q |
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| T |
803445 |
gggatatctaaaattaatttcagtttat----tgtgtccattcaaataagtgtcctcggattaaggtgtctgctcacccaaaacttgttgaatttggttc |
803540 |
T |
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| Q |
233 |
gttactgttatttgctattacaagttagtattacagtatatatatgagcatcttccatgttattttttatgaacctactacattggatatcatacactac |
332 |
Q |
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| T |
803541 |
gttactgttatttgctattacaagttagtattacag----tatatgagcatcttccatgttattttttatgaacctactacattggat------------ |
803624 |
T |
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| Q |
333 |
tatcaaatagtttctcaatgctgctacttcatacttattaaactcatactcatt |
386 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
803625 |
----aaatagtttctcaatgctgctacatcatacttattaaactcatactcatt |
803674 |
T |
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