View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18388_high_15 (Length: 294)
Name: NF18388_high_15
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18388_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 31484030 - 31484182
Alignment:
| Q |
9 |
gacatcatcatattacgcattgcattgcaacatttgcattctaagtcctaaccagtaaccaccacatataacaatgatcatccaacacttacttttatat |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31484030 |
gacatcctcatattacgcattgcattgcaacatttgcattctaagtcctaaccagtaaccaccacatataacaatgatcatccaacacttccttttatat |
31484129 |
T |
|
| Q |
109 |
tgacattaagttatggtcagattttaaattcctaattttgtcatggtcattaa |
161 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31484130 |
tgacataaagttatggtcagattttaaattcctaattttgtcatggtcattaa |
31484182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 31484228 - 31484301
Alignment:
| Q |
207 |
tgatgcaattaagcgcgctaaaatttgaacaaagcatgcaactatttctac--tttacttctccaccaattttt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31484228 |
tgatgcaattaagcgcgctaaaatttgaacaaagcatgcaactatttctactttttacttctccaccaattttt |
31484301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University