View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18388_high_17 (Length: 284)
Name: NF18388_high_17
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18388_high_17 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 126 - 284
Target Start/End: Original strand, 803734 - 803893
Alignment:
| Q |
126 |
ttcaatgttattctgttattttgtaacaatatctatctacat--taccaatgtaatgttaagatagttccaatgaatagaaaaattaaaatacaaattca |
223 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
803734 |
ttcaatgtt-ttctgttattttgtaacaatatctatctatatattaccaatgtaatgttaagatagttccaatgaatagaaaaattaaaatacaaattca |
803832 |
T |
|
| Q |
224 |
gcaacctagtgaacatatatgagactatgacatcattattagagattattctctatcctcg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
803833 |
gcaacctagtgaacatatatgagactatgacatcattattagagattattctctatcctcg |
803893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 803651 - 803722
Alignment:
| Q |
13 |
atacttattaaactcatactcannnnnnnactctaaaagtaaaaaattataaaactctaacaaccataataa |
84 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
803651 |
atacttattaaactcatactcatttttttactctaaaagtaaaaaattatacaactctaacaaccataataa |
803722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University