View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18388_high_18 (Length: 267)
Name: NF18388_high_18
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18388_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 11041036 - 11040818
Alignment:
| Q |
4 |
ccaacattaaaaaggca----gatagtcatatgattattgcactattctccaacccatgatccatattttaaagaagagctgacttttcaacgaaagatc |
99 |
Q |
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| T |
11041036 |
ccaacattaaaaaggcattaagatagtcacatgatcattgcacgattctccaacccatgatccatattttaaacaagagctgacttttcaacgaaagatc |
11040937 |
T |
|
| Q |
100 |
caagnnnnnnnnntgcggacaaattgtgtttgaatattgagttgtaacaaaattacactaaataataactaagctagcataaattttacgtggtggtgtc |
199 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11040936 |
caagaaaaaaaaatgctgacaaattgtgtttgaatattgagttgtaacaaaattacactaaataataactaagctagcataaaatttacgtggtggtgtc |
11040837 |
T |
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| Q |
200 |
taaatataaagaaataaat |
218 |
Q |
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||||||||||||||||||| |
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| T |
11040836 |
taaatataaagaaataaat |
11040818 |
T |
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