View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18388_high_7 (Length: 479)
Name: NF18388_high_7
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18388_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Original strand, 36322564 - 36323014
Alignment:
| Q |
19 |
actttgtgtcatacttcgttggtttcatgcattatgaactagcagatgcagctaacatggtaaccaacttcatgggggtttgttacatgctctccattgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322564 |
actttgtgtcatacttcgttggtttcatgcattatgaactagcagatgcagctaacatggtaaccaacttcatgggggtttgttacatgctctccattgt |
36322663 |
T |
|
| Q |
119 |
cgtagccgtttttgctgatacatggattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaagtttcataattatattatgagca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322664 |
cgtagccgtttttgctgatacatggattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaagtttcataattatattatgagca |
36322763 |
T |
|
| Q |
219 |
atgttatttatcccgacacatgttgtcccaaaattgccagcgaaaatctattttccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggc |
318 |
Q |
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| T |
36322764 |
atgctatttatcccgatacatgttgtcccaaaattgccagcgaaaatctatttttcaatcaaatttcatgcttcccacaaatcaagggaggtggtggggc |
36322863 |
T |
|
| Q |
319 |
ataatttagggagatatcatgattattcggtgcatgttcacttgtgaaattattgggacaata-tttgtcgtgatacatagcaatttccttatattatat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36322864 |
ataatttagggagatatcatgattattcggtgcatgttcacttgtgaaactattgggacaatattttgtcgtgatacatagcaatttccttatattatat |
36322963 |
T |
|
| Q |
418 |
agagcatgtgacaaacgtttgacaccattatattggtggtggttgatgatg |
468 |
Q |
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| T |
36322964 |
agagcatgtgacaaatgtttgacaccattatattggtggtggttgatgatg |
36323014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 36329362 - 36329542
Alignment:
| Q |
19 |
actttgtgtcatacttcgttggtttcatgcattatgaactagcagatgcagctaacatggtaaccaacttcatgggggtttgttacatgctctccattgt |
118 |
Q |
| |
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||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || || ||||||||||||| |
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| T |
36329362 |
actttgtgtcatacttcattgggattatgcattatgaactagcagatgcagctaacatggtaaccaatttcatgggagttagtaacttgctctccattgt |
36329461 |
T |
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| Q |
119 |
cgtagccgtttttgctgatacatggattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaagttt |
199 |
Q |
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| T |
36329462 |
cgtcgccgttcttgctgattcattcattggaagatataaaaccgttcttatttctggcttctttgagtgtttggtaagttt |
36329542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 5458310 - 5458463
Alignment:
| Q |
43 |
tcatgcattatgaactagcagatgcagctaacatggtaaccaacttcatgggggtttgttacatgctctccattgtcgtagccgtttttgctgatacatg |
142 |
Q |
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||||||||||| |||||| |||||| ||||||||| | ||||||| ||||| || ||||||| ||||| ||| | || || | ||||||||||||| |
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| T |
5458310 |
tcatgcattatcaactagaagatgctgctaacatgctcaccaactatatgggtgtcagttacattctctctattttggtggctatcgttgctgatacatg |
5458409 |
T |
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| Q |
143 |
gattggaagacacaaatccgttcttatttctggctgctttgagtttttggtaag |
196 |
Q |
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|||||| ||| ||||||| ||| | ||||||||| ||| |||||||||||||| |
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| T |
5458410 |
gattggtagatacaaatctgttttattttctggcttcttcgagtttttggtaag |
5458463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 326
Target Start/End: Complemental strand, 17438909 - 17438840
Alignment:
| Q |
257 |
agcgaaaatctattttccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataattta |
326 |
Q |
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| T |
17438909 |
agcgataatcaattgtccaattaaatttctttctggccacaaatcaagggaggtggtggggcataattta |
17438840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 11168178 - 11168124
Alignment:
| Q |
272 |
tccaatcaaatttcatgcttcccacaaatcaagggaggtggtggggcataattta |
326 |
Q |
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|||||||||||||| | || ||||||||||||||||||||||||||||| |||| |
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| T |
11168178 |
tccaatcaaatttctttctgaccacaaatcaagggaggtggtggggcatatttta |
11168124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 24606063 - 24605997
Alignment:
| Q |
218 |
aatgttatttatcccgacacatgttgtcccaaaattgccagcgaaaatctattttccaatcaaatttc |
285 |
Q |
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| T |
24606063 |
aatgctatttatcccaatacatgttgtcccaaa-ttgctagtgaaaatccattttctaatcaaatttc |
24605997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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