View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18388_high_9 (Length: 392)
Name: NF18388_high_9
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18388_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 34504072 - 34504439
Alignment:
| Q |
18 |
atattgtcattgtctttgtgcatgtttagtcggtaattaagtactggtaatataaacttttgaactgattcaataacaacgtgcatttgcatagtgggcc |
117 |
Q |
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| T |
34504072 |
atattatcattgtctttgtgtatgtttagtcggtaattaagtactggtaatataaacttttgaactgattcaataacaacgtacatttgcatagtggacc |
34504171 |
T |
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| Q |
118 |
aagtgactaaatgtttagtcttcactgttttttaactagtatttcctgaaattaattaatggagtgtatatataatggataagtaaattgatagttctat |
217 |
Q |
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| T |
34504172 |
aagtgactaaatgtttagtcttcactgttttttaactagtattttctgaaattaattaatggagtgtataaataatggataagtaaattaatagttctat |
34504271 |
T |
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| Q |
218 |
gttgaactaaatatatattattcattcctttt-aaaaattttacttgcatacataatggaagaaacctctacttatcagaacacactacttttaatgtta |
316 |
Q |
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| T |
34504272 |
gttgaactaaatatatattattcattcattttcaaaaaatttacttgcatacataatggaagaaacctctacttatcagaacacactacttttaatgtta |
34504371 |
T |
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| Q |
317 |
caagtcttgaactgaacatcttcaatggccaatttatctgttggaaagggacattcaattttcttctc |
384 |
Q |
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| T |
34504372 |
caagtcttgaactgaacatcttcaatagccaatttatctgttggaaagggacattcaattttcttctc |
34504439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 384
Target Start/End: Original strand, 45077808 - 45077903
Alignment:
| Q |
289 |
ttatcagaacacactacttttaatgttacaagtcttgaactgaacatcttcaatggccaatttatctgttggaaagggacattcaattttcttctc |
384 |
Q |
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| T |
45077808 |
ttatcagaagacactactttggaagttacaagtcttgaattgaacattttcgatggctagtttatctgttggaaaaggacattcaatttccttctc |
45077903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 45067033 - 45067113
Alignment:
| Q |
304 |
acttttaatgttacaagtcttgaactgaacatcttcaatggccaatttatctgttggaaagggacattcaattttcttctc |
384 |
Q |
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| T |
45067033 |
actttgaaagttacaagtcttgaactgaacattttcaatgggtagtttatctgttggaaaaggacattcgattttcttctc |
45067113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 45074585 - 45074660
Alignment:
| Q |
299 |
acactacttttaatgttacaagtcttgaactgaacatcttcaatggccaatttatctgttggaaagggacattcaa |
374 |
Q |
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| T |
45074585 |
acactacttttgaagttacaagtcttgaactgaacattttcaatggtaagtttatcagttggaaaaggacattcaa |
45074660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 289 - 384
Target Start/End: Original strand, 45082104 - 45082199
Alignment:
| Q |
289 |
ttatcagaacacactacttttaatgttacaagtcttgaactgaacatcttcaatggccaatttatctgttggaaagggacattcaattttcttctc |
384 |
Q |
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||||||||| |||||||||| | ||| ||||||||||| ||||||| |||||||| | ||||||| ||||||| ||||||||||||| |||||| |
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| T |
45082104 |
ttatcagaagacactactttggaagttgcaagtcttgaattgaacattttcaatgggtagtttatctcttggaaaaggacattcaatttccttctc |
45082199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 376
Target Start/End: Original strand, 12697985 - 12698067
Alignment:
| Q |
294 |
agaacacactacttttaatgttacaagtcttgaactgaacatcttcaatggccaatttatctgttggaaagggacattcaatt |
376 |
Q |
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|||| |||||||||| || |||||||||||||||| |||||| |||||||| | |||| |||||||||| |||||||||||| |
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| T |
12697985 |
agaagacactactttgaaagttacaagtcttgaacagaacattttcaatgggtagtttaactgttggaaaaggacattcaatt |
12698067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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