View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18388_low_1 (Length: 876)
Name: NF18388_low_1
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18388_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 606; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 22 - 655
Target Start/End: Complemental strand, 35228678 - 35228045
Alignment:
| Q |
22 |
aaattatgctaattaagatgatgttgattcttgtttataggtagttgttgggcatttgcaattgtggctgcaatagaaggtattcatcaaataaccacag |
121 |
Q |
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| T |
35228678 |
aaattatgctaattaagatgatgttgattcttgtttataggtagttgttgggcatttgcaactgtggctgcaatagaaggtattcatcaaataaccacag |
35228579 |
T |
|
| Q |
122 |
gaagattagtatcactctctgagcaagagctagtggattgtgtgaaaactaatacaactgatggatgcaatggtggttatgtagaagatgcttgtgattt |
221 |
Q |
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| T |
35228578 |
gaagattagtatcactctctgagcaagagctagtggattgtgtcaaaactaatacaactgatggatgcaatggtggttatgtagaagatgcttgtgattt |
35228479 |
T |
|
| Q |
222 |
catagttaaaaaaggaggaataacaagtgaaacaaattacccttatacaagagttgatggtaaatgcaatgttaggaaaggaacctacaatgttgctaaa |
321 |
Q |
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| T |
35228478 |
catagttaaaaaaggaggaataacaagtgaaacaaattacccttatacaagggttgatggtaaatgcaatgttaggaaaggaacctacaatgttgctaaa |
35228379 |
T |
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| Q |
322 |
attaagggatatgagcatgttcccgccaataatgaaaaggcgctcttaaaagcggtggcaaatcaacctatagcggtttatattgccgcgacaaaacgcg |
421 |
Q |
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| T |
35228378 |
attaagggatatgagcatgttcccgccaataatgaaaaggcgctcttaaaagcggtggcaaatcaacctatagcggtttatatcgccgcgacaaaacgcg |
35228279 |
T |
|
| Q |
422 |
cttttcaattttactcaagtggaattttgaaaggaaaatgtggaatttatttagatcatacagtgactatagttggttatggcaccagtgatgatggtgt |
521 |
Q |
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| T |
35228278 |
cttttcaattttactcaagtggaattttgaaaggaaaatgtggaattgatttagatcatacagttactatagttggttatggtaccagtgatgatggtgt |
35228179 |
T |
|
| Q |
522 |
gaagtattggctagtgaaaaattcatggggtactaaatggggtgagaaaggatatatcaagattaagagagacgtgcatgccaaggaaggttcatgtgga |
621 |
Q |
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| T |
35228178 |
gaagtattggctagtgaaaaattcatggggtactaaatggggtgagaaaggatatatcaagattaagagagacgtgcatgccaaggaaggttcatgtgga |
35228079 |
T |
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| Q |
622 |
attgctatggttcccacttatccaattgtttaag |
655 |
Q |
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| T |
35228078 |
attgctatggttcccacttatccaattgtttaag |
35228045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 695 - 778
Target Start/End: Complemental strand, 35228046 - 35227963
Alignment:
| Q |
695 |
agtcttcttatactagtttgatgaattgcttgtgtttgaattagttatgtgtgtgagtgtttgaataaatagctagggtgtgta |
778 |
Q |
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| T |
35228046 |
agtcttcttatactagtttgatgaattgcttgtgtttgaattagttatgtgtgtgagtgtttgaataaatagctagggtgtgta |
35227963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 813 - 863
Target Start/End: Complemental strand, 35227961 - 35227911
Alignment:
| Q |
813 |
tgtaatacttgagatttttctcatgaattatatgaattgagtgagtttgtt |
863 |
Q |
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| T |
35227961 |
tgtaatacttgagatttttctcatgaatgatatgaaatgagtgagtttgtt |
35227911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 31176979 - 31176914
Alignment:
| Q |
57 |
tataggtagttgttgggcatttgcaattgtggctgcaatagaaggtattcatcaaataaccacagg |
122 |
Q |
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| T |
31176979 |
tataggtagttgttgggcattttcaactgtggcttccatagagggtatccaccaaataacaacagg |
31176914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 29746533 - 29746586
Alignment:
| Q |
65 |
gttgttgggcatttgcaattgtggctgcaatagaaggtattcatcaaataacca |
118 |
Q |
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| T |
29746533 |
gttgttgggcattttctacggtggctgcaatagaaggtatccaacaaataacca |
29746586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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