View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18388_low_12 (Length: 365)

Name: NF18388_low_12
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18388_low_12
NF18388_low_12
[»] chr5 (3 HSPs)
chr5 (177-348)||(23092778-23092949)
chr5 (18-81)||(23092317-23092380)
chr5 (84-119)||(32270007-32270043)
[»] chr7 (2 HSPs)
chr7 (85-155)||(25187103-25187177)
chr7 (120-163)||(45003061-45003104)
[»] chr4 (2 HSPs)
chr4 (99-163)||(50001090-50001157)
chr4 (85-155)||(30940904-30940978)
[»] scaffold0009 (1 HSPs)
scaffold0009 (85-163)||(102967-103049)
[»] chr2 (3 HSPs)
chr2 (85-155)||(2248503-2248577)
chr2 (85-163)||(3208408-3208490)
chr2 (85-155)||(4413238-4413312)
[»] chr6 (1 HSPs)
chr6 (84-163)||(28625791-28625874)
[»] chr3 (4 HSPs)
chr3 (85-160)||(32546656-32546735)
chr3 (85-163)||(53785570-53785652)
chr3 (85-149)||(44694-44762)
chr3 (99-163)||(26772634-26772701)
[»] chr1 (2 HSPs)
chr1 (85-155)||(868573-868647)
chr1 (85-160)||(7213104-7213183)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 177 - 348
Target Start/End: Original strand, 23092778 - 23092949
Alignment:
Q  177 acaataatgtaatcataaattttgtgattaacatgcaacactaaccaccttactaacaaatgagcaatattgtttnnnnnnntgatcttaaaatttagaa 276  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||       |||||||||| |||| ||    
T  23092778 acaataatgtaatcataaatttggtgattaacacgcaacactaaccaccttactaataaatgagcaatattgtttaaaaaaatgatcttaaagtttaaaa 23092877  T
Q  277 aagattgatacgttttaccctgcaaaacaataacactaaattcgaactgagagttgagcttaccagatacgt 348  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23092878 aagattgatacgttttaccgtgcaaaacaataacactaaattcgaactaagagttgagcttaccagatacgt 23092949  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 23092317 - 23092380
Alignment:
Q  18 gaaacacagtctaatgaagattaaactcaactcatttcattaattataaatgatttaatacata 81  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23092317 gaaacacaatcaaatgaagattaaactcaactcatttcattaattataaatgatttaatacata 23092380  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 119
Target Start/End: Complemental strand, 32270043 - 32270007
Alignment:
Q  84 tattatttacacttga-tagaaggcaagcgggtaaca 119  Q
    |||||||||||||||| ||||||||||||||||||||    
T  32270043 tattatttacacttgaatagaaggcaagcgggtaaca 32270007  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 25187177 - 25187103
Alignment:
Q  85 attatttacacttga-tagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatc 155  Q
    ||||||||||||||| ||||||||||||||| ||||   ||||||||| ||||||||||||||| ||||||||||    
T  25187177 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagatctttttagatggtaaaatcaatc 25187103  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 45003104 - 45003061
Alignment:
Q  120 tgcgccgctggatctttttagatggcaaaatcaatcttcgtaaa 163  Q
    ||||||||| || |||||| ||||||||||||||||||||||||    
T  45003104 tgcgccgctagacctttttggatggcaaaatcaatcttcgtaaa 45003061  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 50001157 - 50001090
Alignment:
Q  99 atagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatcttcgtaaa 163  Q
    |||| ||||||||||| ||||   ||||||||| ||||||||| ||||||||||||||||||||||||    
T  50001157 ataggaggcaagcgggcaacaagctgcgccgctagatctttttggatggcaaaatcaatcttcgtaaa 50001090  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 30940978 - 30940904
Alignment:
Q  85 attatttacacttga-tagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatc 155  Q
    ||||||||||||||| ||||||||||||||| ||||   |||| |||| || |||||| ||||||||||||||||    
T  30940978 attatttacacttgaatagaaggcaagcgggcaacaagctgcgtcgctagacctttttggatggcaaaatcaatc 30940904  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 102967 - 103049
Alignment:
Q  85 attatttacacttga-tagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatcttcgtaaa 163  Q
    ||||||||||||||| ||||||||||||||| ||||   ||||||||| || |||||| |||||||||| ||||| |||||||    
T  102967 attatttacacttgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggcaaaaccaatcctcgtaaa 103049  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 2248503 - 2248577
Alignment:
Q  85 attatttacacttgat-agaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatc 155  Q
    |||||||||||||||  |||||||||||||||||||   || |||||||||||||||||||||| |||| |||||    
T  2248503 attatttacacttgaacagaaggcaagcgggtaacagattgtgccgctggatctttttagatggtaaaaccaatc 2248577  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 3208490 - 3208408
Alignment:
Q  85 attatttacacttga-tagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatcttcgtaaa 163  Q
    ||||||||||||||| ||||||||||||||| ||||   |||||||||  | |||||| |||||||||| ||||| |||||||    
T  3208490 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctaaacctttttggatggcaaaaccaatcctcgtaaa 3208408  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 4413312 - 4413238
Alignment:
Q  85 attatttacacttga-tagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatc 155  Q
    ||||||||||||||| ||||||||||| ||| ||||   ||||||||| || |||||| ||||||||||||||||    
T  4413312 attatttacacttgaatagaaggcaagtgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatc 4413238  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 28625791 - 28625874
Alignment:
Q  84 tattatttacacttga-tagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatcttcgtaaa 163  Q
    |||||||||||||| | |||||||||| ||||||| |   ||||||||| |||||||||  |||||||||||||||| ||||||    
T  28625791 tattatttacacttaaatagaaggcaaacgggtaataagctgcgccgctagatctttttgaatggcaaaatcaatctccgtaaa 28625874  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 32546656 - 32546735
Alignment:
Q  85 attatttacacttga-tagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatcttcgt 160  Q
    ||||||||||||||| ||||||||||||||| ||||   ||||||||| || |||||| |||||||||| ||||| ||||    
T  32546656 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgt 32546735  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 53785570 - 53785652
Alignment:
Q  85 attatttacacttga-tagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatcttcgtaaa 163  Q
    ||||||||||||||| ||||||||||||||| ||||   | |||||||||| ||| || |||||||||| ||||| |||||||    
T  53785570 attatttacacttgaatagaaggcaagcgggcaacaagctacgccgctggaccttgttggatggcaaaaccaatcctcgtaaa 53785652  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 44694 - 44762
Alignment:
Q  85 attatttacacttga-tagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaa 149  Q
    ||||||||||||||| ||||||||||||||| ||||   ||||||||| || |||||| ||||||||||    
T  44694 attatttacacttgaatagaaggcaagcgggcaacaaactgcgccgctagacctttttggatggcaaaa 44762  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 26772634 - 26772701
Alignment:
Q  99 atagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatcttcgtaaa 163  Q
    |||| ||||||||||| ||||   ||||||||| || |||||| |||||||||||||||| |||||||    
T  26772634 ataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaa 26772701  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 868647 - 868573
Alignment:
Q  85 attatttacacttga-tagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatc 155  Q
    ||||||||||||||| ||||||||||||||| ||||   ||||||||| || |||||| |||||||||| |||||    
T  868647 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatc 868573  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 7213104 - 7213183
Alignment:
Q  85 attatttacacttga-tagaaggcaagcgggtaaca---tgcgccgctggatctttttagatggcaaaatcaatcttcgt 160  Q
    ||||||||||||||| ||||||||||||||| ||||   ||||||||| || |||||| ||||| |||| ||||| ||||    
T  7213104 attatttacacttgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggtaaaaccaatcatcgt 7213183  T

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