View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18388_low_16 (Length: 285)
Name: NF18388_low_16
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18388_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 41336904 - 41337170
Alignment:
| Q |
1 |
aagcaaacctgacaatgttcttcacgaagtggttggtcagaatgaattatatgatggagatcagtgtccatcaattcatagacaatgtatacatcattga |
100 |
Q |
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| T |
41336904 |
aagcaaacctgacaatgttcttcacgaagtggttggtcagaatgaattatatgatggagatcagtgtccatcaattcatagacaatgtatacatcattga |
41337003 |
T |
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| Q |
101 |
atgcctcctttttcgggggtcgtatgatatccttgatggcaatgatctggtgaaggataatagcaattgagaaaatatctatgaagagaaaatatttttc |
200 |
Q |
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| T |
41337004 |
atgcctcctttttcgggggtcgtatgatatccttgatggcaatgatctggtgaaggataatagcaattgagaaaatatctatgaagagaaaatatttttc |
41337103 |
T |
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| Q |
201 |
gcttccatgatagttgtatgggtaagaacaaaagtnnnnnnnctttcccttacctttgacatatata |
267 |
Q |
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| T |
41337104 |
gcttccatgatagttgtatgggtaagaacaaaagtaaaaaaactttcccttacctttgacatatata |
41337170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 2607693 - 2607583
Alignment:
| Q |
39 |
agaatgaattatatgatggagatcagtgtccatcaattcatagacaatgtatacatcattgaatgcctcctttttcgggggtcgtatgatatccttgatg |
138 |
Q |
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|||| |||| || ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||||||| || |||||||| |||||||| || |
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| T |
2607693 |
agaacgaataatctgatgaagatcagtgtccatcaattcataaacaatgtaaacatcattaaaattatccttttgtggaggtcgtataatatccttaata |
2607594 |
T |
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| Q |
139 |
gcaatgatctg |
149 |
Q |
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| T |
2607593 |
gcaataatctg |
2607583 |
T |
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