View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18388_low_2 (Length: 588)

Name: NF18388_low_2
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18388_low_2
NF18388_low_2
[»] chr6 (10 HSPs)
chr6 (36-359)||(30758673-30758996)
chr6 (424-583)||(30759061-30759223)
chr6 (36-213)||(18191829-18192006)
chr6 (36-211)||(31855736-31855910)
chr6 (457-583)||(30748836-30748968)
chr6 (38-213)||(21396377-21396541)
chr6 (524-560)||(30748945-30748981)
chr6 (524-560)||(30759200-30759236)
chr6 (261-302)||(18193031-18193072)
chr6 (265-297)||(226120-226152)
[»] chr3 (5 HSPs)
chr3 (36-213)||(36163466-36163643)
chr3 (37-185)||(37463790-37463938)
chr3 (127-198)||(20884324-20884392)
chr3 (148-200)||(19801880-19801932)
chr3 (261-297)||(36164602-36164638)
[»] chr8 (3 HSPs)
chr8 (36-296)||(32565434-32565695)
chr8 (147-200)||(17864627-17864680)
chr8 (261-293)||(32564510-32564542)
[»] chr2 (3 HSPs)
chr2 (36-297)||(4753527-4753788)
chr2 (128-212)||(36669048-36669132)
chr2 (128-212)||(31621998-31622082)
[»] chr4 (5 HSPs)
chr4 (48-213)||(53226763-53226928)
chr4 (128-199)||(31409407-31409478)
chr4 (142-213)||(52190276-52190347)
chr4 (161-199)||(30830024-30830062)
chr4 (266-302)||(52189180-52189216)
[»] chr5 (4 HSPs)
chr5 (128-212)||(16727896-16727980)
chr5 (142-211)||(16306720-16306789)
chr5 (161-205)||(35968622-35968666)
chr5 (161-199)||(38921552-38921590)
[»] chr1 (6 HSPs)
chr1 (128-212)||(26529592-26529676)
chr1 (128-212)||(36574046-36574130)
chr1 (106-200)||(49917484-49917578)
chr1 (136-196)||(17332919-17332979)
chr1 (161-199)||(35063548-35063586)
chr1 (265-306)||(49919731-49919772)
[»] chr7 (2 HSPs)
chr7 (161-199)||(41739719-41739757)
chr7 (70-155)||(28643175-28643260)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 36 - 359
Target Start/End: Original strand, 30758673 - 30758996
Alignment:
Q  36 gtgagaataaaggagggactcaaatgactgttgcaatgtttgctatcccatgcaattacgtccctgcctgcgtggaaggccaacgatgtggttgaagtgg 135  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30758673 gtgagaataaaggagggactcaaatgattgttgcaatgtttgctatcccatgcaattacgtccctgcctgcgtggaaggccaacaatgtggttgaagtgg 30758772  T
Q  136 caagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattggtgagnnnnnnnattcaatttat 235  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||  |         |||||||||||    
T  30758773 caagggcaacagacacataagcaccgttaacaccaagttaatgttttggatgcatttgactaacaaaacatacattgagggagtttttgattcaatttat 30758872  T
Q  236 tgatcaaagaactggtgtgactgcaagggacactttcaaggacccaaacgagggtttactctaaaaagaatnnnnnnngacaaggctatttataatcata 335  Q
    ||||||||  || |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||| |||||| |||||    
T  30758873 tgatcaaatgacgggtgtgacagcgagggacactttcaaggacccaaatgagggtttactctaaaaagaataaaaaaagacaaggctgtttatagtcata 30758972  T
Q  336 atagtcacaaattgtcccttatta 359  Q
    ||||||||||||||||||||||||    
T  30758973 atagtcacaaattgtcccttatta 30758996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 424 - 583
Target Start/End: Original strand, 30759061 - 30759223
Alignment:
Q  424 gttcatacccccaccatgggctcttcaaccac---aaggatttagattcatttggagcacggtcggttggaattgaccgcaataaactctttctttgatg 520  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||    
T  30759061 gttcatacccccaccatgggctcttcaaccacttgaaggatttagattcatttggagcatggtcggttagaattgaccgcaataatctctttgtttgatg 30759160  T
Q  521 attctttcactttcttcgtctttgatcttgtcattggacctttcactttctttgtctctgatc 583  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  30759161 attctttcactttcttcgtcattgatcttgtcattggacctttcactttctttgtctttgatc 30759223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 18192006 - 18191829
Alignment:
Q  36 gtgagaataaaggagggactcaaatgactgttgcaatgtttgctatcccatgcaattacgtccctgcctgcgtggaaggccaacgatgtggttgaagtgg 135  Q
    ||||||||||| ||||||||  |||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  18192006 gtgagaataaatgagggactataatgcctgttgcaatgtttgttatcccatgcaattacgtccttgcctacgtggaaggccaacaatgtggttgaagtgg 18191907  T
Q  136 caagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattgg 213  Q
    ||||| |||| |||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||||||||||||    
T  18191906 caaggataacggacacatcagcaccattaataccaagttaacgttttggatgcatttgactaacataacatacattgg 18191829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 31855910 - 31855736
Alignment:
Q  36 gtgagaataaaggagggactcaaatgactgttgcaatgtttgctatcccatgcaattacgtccctgcctgcgtggaaggccaacgatgtggttgaagtgg 135  Q
    |||||||||||||||| || ||||| ||| ||| |||||||| ||||||||||||||||||| || || || ||||||| |||| ||| |||||||||||    
T  31855910 gtgagaataaaggagg-acacaaattacttttgtaatgtttggtatcccatgcaattacgtctctaccagcatggaaggtcaacaatgcggttgaagtgg 31855812  T
Q  136 caagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacatt 211  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31855811 caagtgtaatagacacatcagcaccgttaacaccaaattaatgttttggatacatttgactaacataacatacatt 31855736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 457 - 583
Target Start/End: Original strand, 30748836 - 30748968
Alignment:
Q  457 aggatttagattcatttggagcacggtc------ggttggaattgaccgcaataaactctttctttgatgattctttcactttcttcgtctttgatcttg 550  Q
    ||||||||||||||||||||||| ||||      ||||||| ||||| |||| || |||||| |||||||| |||||||||||||| ||||||||||||     
T  30748836 aggatttagattcatttggagcatggtccttcatggttggacttgactgcaagaatctctttgtttgatgactctttcactttctttgtctttgatctta 30748935  T
Q  551 tcattggacctttcactttctttgtctctgatc 583  Q
    ||||||||||||||||||||||||||| |||||    
T  30748936 tcattggacctttcactttctttgtctttgatc 30748968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 21396541 - 21396377
Alignment:
Q  38 gagaataaaggagggactcaaatgactgttgcaatgtttgctatcccatgcaattacgtccctgcctgcgtggaaggccaacgatgtggttgaagtggca 137  Q
    |||||||||| |||||| ||||||||  |||||||||||| ||||| ||||||||  ||||||||| ||||||||||| ||| |||| | || |||||||    
T  21396541 gagaataaag-agggacacaaatgaccattgcaatgtttgttatcctatgcaattgagtccctgccagcgtggaaggcaaacaatgtagctgcagtggca 21396443  T
Q  138 agggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattgg 213  Q
    || |||||          | |||||||||||||| |||  |||||||||| |||||||||| | ||||||||||||    
T  21396442 agtgtaac----------ggaccgttaacaccaagttagcgttttggatgtatttgactaaaagaacatacattgg 21396377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 560
Target Start/End: Original strand, 30748945 - 30748981
Alignment:
Q  524 ctttcactttcttcgtctttgatcttgtcattggacc 560  Q
    ||||||||||||| |||||||||||||||||||||||    
T  30748945 ctttcactttctttgtctttgatcttgtcattggacc 30748981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 524 - 560
Target Start/End: Original strand, 30759200 - 30759236
Alignment:
Q  524 ctttcactttcttcgtctttgatcttgtcattggacc 560  Q
    ||||||||||||| |||||||||||||||||||||||    
T  30759200 ctttcactttctttgtctttgatcttgtcattggacc 30759236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 18193031 - 18193072
Alignment:
Q  261 agggacactttcaaggacccaaacgagggtttactctaaaaa 302  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||    
T  18193031 agggacactttcagggacccaaatgagggtttactcttaaaa 18193072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 226152 - 226120
Alignment:
Q  265 acactttcaaggacccaaacgagggtttactct 297  Q
    ||||||||||||||||||| |||||||||||||    
T  226152 acactttcaaggacccaaatgagggtttactct 226120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 36163643 - 36163466
Alignment:
Q  36 gtgagaataaaggagggactcaaatgactgttgcaatgtttgctatcccatgcaattacgtccctgcctgcgtggaaggccaacgatgtggttgaagtgg 135  Q
    ||||||||||| |||||||| ||||| || |||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  36163643 gtgagaataaatgagggactaaaatgcctattgcaatgtttgttatcccatgcaattacgtccctgcctacgtggaaggccaacaatgtggttgaagtgg 36163544  T
Q  136 caagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattgg 213  Q
    ||||| |||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  36163543 caaggataacggacacatcagcaccgttaacaccaagttaacgttttggatgcatttgactaacataacgtacattgg 36163466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 37463938 - 37463790
Alignment:
Q  37 tgagaataaaggagggactcaaatgactgttgcaatgtttgctatcccatgcaattacgtccctgcctgcgtggaaggccaacgatgtggttgaagtggc 136  Q
    |||||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||| ||   | ||||||||||||| ||| |  |||||| ||    
T  37463938 tgagaataaaggagggacacaaatgactattgtaatgtttggtatcccatgcaattacgtccttgatagtgtggaaggccaacaatgcgagtgaagtagc 37463839  T
Q  137 aagggtaacagacacatcagcaccgttaacaccaaattaatgttttgga 185  Q
    ||  | ||| ||||| |||||| |||||||||||| |||| ||||||||    
T  37463838 aaatgcaacggacacttcagcatcgttaacaccaagttaacgttttgga 37463790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 20884392 - 20884324
Alignment:
Q  127 ttgaagtggcaagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaa 198  Q
    ||||||||||||| |||| ||||| |||| |||||||| ||   | |||| |||||||||||||||||||||    
T  20884392 ttgaagtggcaagtgtaatagacaaatcaacaccgttatca---agttaacgttttggatgcatttgactaa 20884324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 19801932 - 19801880
Alignment:
Q  148 acacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaaca 200  Q
    |||||| |||||||||||||| || |||| |||||||||  ||||||||||||    
T  19801932 acacattagcaccgttaacacaaagttaacgttttggataaatttgactaaca 19801880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 36164602 - 36164638
Alignment:
Q  261 agggacactttcaaggacccaaacgagggtttactct 297  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  36164602 agggacactttcagggacccaaatgagggtttactct 36164638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 36 - 296
Target Start/End: Original strand, 32565434 - 32565695
Alignment:
Q  36 gtgagaataaaggagggactcaaatgactgttgcaatgtttgctatcccatgcaattacgtccctgcc-tgcgtggaaggccaacgatgtggttgaagtg 134  Q
    ||||||||||||||||||||||||||  ||||||||||| || ||||||||||||||||||||||||| | |||||||||| ||| ||||||||||||||    
T  32565434 gtgagaataaaggagggactcaaatgcttgttgcaatgtctgttatcccatgcaattacgtccctgccctacgtggaaggcgaacaatgtggttgaagtg 32565533  T
Q  135 gcaagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattggtgagnnnnnnnattcaattta 234  Q
    |||||| |||| ||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||| |         ||||| |  |    
T  32565534 gcaaggataacggacacatcagcaccgttaacatcaagttaacgttttggatgcatttgactaacataacgtacattgggggagtttttgattcattaaa 32565633  T
Q  235 ttgatcaaagaactggtgtgactgcaagggacactttcaaggacccaaacgagggtttactc 296  Q
    |||||| | | |||||| |||  || ||||||||||||| ||||| ||||||||||||||||    
T  32565634 ttgatcgagggactggtctgatagcgagggacactttcagggacctaaacgagggtttactc 32565695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 17864627 - 17864680
Alignment:
Q  147 gacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaaca 200  Q
    ||||||||| |||  |||||||||| ||||||||||||||||||||||||||||    
T  17864627 gacacatcaacacaattaacaccaagttaatgttttggatgcatttgactaaca 17864680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 32564542 - 32564510
Alignment:
Q  261 agggacactttcaaggacccaaacgagggttta 293  Q
    ||||||||||||||||||||||| |||||||||    
T  32564542 agggacactttcaaggacccaaatgagggttta 32564510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 36 - 297
Target Start/End: Complemental strand, 4753788 - 4753527
Alignment:
Q  36 gtgagaataaaggagggactcaaatgactgttgcaatgtttgctatcccatgcaattacgtccctgcctgcgtggaaggccaacgatgtggttgaagtgg 135  Q
    ||||||||||||||||||| ||||||||  |||||||||||| ||||  ||||||||| ||||||||| || |||||||||||| |||  | |||| ||     
T  4753788 gtgagaataaaggagggacacaaatgaccattgcaatgtttgttatcatatgcaattaagtccctgccagcatggaaggccaacaatggaggtgaaatga 4753689  T
Q  136 caagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattggtgagnnnnnnnattcaatttat 235  Q
    || |  ||| |||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||  |         ||||| || ||    
T  4753688 catgtttaatagacacatcagcgccgttaacaccaagttaacgttttggatgcatttgactaacaaaacatacattgagggagtttttgattcatttaat 4753589  T
Q  236 tgatcaaagaactggtgtgactgcaagggacactttcaaggacccaaacgagggtttactct 297  Q
    ||||| | | |||||| |||  || || |||||||||| |||||||||||||||||||||||    
T  4753588 tgatccagggactggtctgatagcgagagacactttcagggacccaaacgagggtttactct 4753527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 36669048 - 36669132
Alignment:
Q  128 tgaagtggcaagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattg 212  Q
    |||||||||| | |||||  |||||||| ||||||||| | ||| |||| ||||||||||||||||||||||| |||| ||||||    
T  36669048 tgaagtggcatgtgtaacgaacacatcatcaccgttaatatcaagttaacgttttggatgcatttgactaacagaacagacattg 36669132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 31621998 - 31622082
Alignment:
Q  128 tgaagtggcaagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattg 212  Q
    |||||||||| | ||||  |||||| ||||||||||| || ||| |||| |||||||||||||||||| |||  |||| ||||||    
T  31621998 tgaagtggcatgtgtaatggacacaccagcaccgttagcatcaagttaacgttttggatgcatttgacaaacggaacaaacattg 31622082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 48 - 213
Target Start/End: Complemental strand, 53226928 - 53226763
Alignment:
Q  48 gagggactcaaatgactgttgcaatgtttgctatcccatgcaattacgtccctgcctgcgtggaaggccaacgatgtggttgaagtggcaagggtaacag 147  Q
    ||||||| ||||||||  || ||||||||| |||||  |||||||  || |||||| ||| |||||||||||||||  | | |||||||||| |||||||    
T  53226928 gagggacacaaatgaccatttcaatgtttgttatcctgtgcaattgagttcctgccagcgcggaaggccaacgatgcagctaaagtggcaagtgtaacag 53226829  T
Q  148 acacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattgg 213  Q
    |||  ||||||| |||||||| || |||| ||||  ||||||||||||||  | ||||||||||||    
T  53226828 acaagtcagcactgttaacactaagttaacgtttcagatgcatttgactattagaacatacattgg 53226763  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 31409478 - 31409407
Alignment:
Q  128 tgaagtggcaagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaac 199  Q
    ||||||||||||  |||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  31409478 tgaagtggcaagtataaccgacacatcagcaccgttaacaccaagttaacgttttggatgcatttgactaac 31409407  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 52190276 - 52190347
Alignment:
Q  142 taacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattgg 213  Q
    |||| |||||||||||||  |||||||||| |||| ||||||||||||||||||||||| |||| |||||||    
T  52190276 taacggacacatcagcacatttaacaccaagttaacgttttggatgcatttgactaacaaaacagacattgg 52190347  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 30830062 - 30830024
Alignment:
Q  161 gttaacaccaaattaatgttttggatgcatttgactaac 199  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  30830062 gttaacaccaagttaacgttttggatgcatttgactaac 30830024  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 52189216 - 52189180
Alignment:
Q  266 cactttcaaggacccaaacgagggtttactctaaaaa 302  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  52189216 cactttcagggacccaaatgagggtttactctaaaaa 52189180  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 16727980 - 16727896
Alignment:
Q  128 tgaagtggcaagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattg 212  Q
    |||||||||| | ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||  |||| ||||||    
T  16727980 tgaagtggcatgtgtaacggacacatcagcaccgttaacatcaagttaatgttttggatgcatttgactaacggaacagacattg 16727896  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 16306720 - 16306789
Alignment:
Q  142 taacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacatt 211  Q
    |||||||||||||||| |||||||| |||| |||| ||||| ||||||||||||||||||||||||||||    
T  16306720 taacagacacatcagcgccgttaactccaagttaacgttttagatgcatttgactaacataacatacatt 16306789  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 35968622 - 35968666
Alignment:
Q  161 gttaacaccaaattaatgttttggatgcatttgactaacataaca 205  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||    
T  35968622 gttaacaccaagttaacgttttggatgcatttgactaacaaaaca 35968666  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 38921590 - 38921552
Alignment:
Q  161 gttaacaccaaattaatgttttggatgcatttgactaac 199  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  38921590 gttaacaccaagttaacgttttggatgcatttgactaac 38921552  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 26529676 - 26529592
Alignment:
Q  128 tgaagtggcaagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattg 212  Q
    |||||||| | | ||||| |||| |||||||||||||||| ||| |||| ||||||||||||||||||||||| |||| ||||||    
T  26529676 tgaagtggtatgtgtaacggacaaatcagcaccgttaacatcaagttaacgttttggatgcatttgactaacagaacaaacattg 26529592  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 36574130 - 36574046
Alignment:
Q  128 tgaagtggcaagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaacataacatacattg 212  Q
    |||||||||| | ||||| |||||||||||||||||| || ||| |||| ||||||||||||||||||||||  |||| ||||||    
T  36574130 tgaagtggcatgtgtaacggacacatcagcaccgttagcatcaagttaacgttttggatgcatttgactaacggaacagacattg 36574046  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 49917578 - 49917484
Alignment:
Q  106 cgtggaaggccaacgatgtggttgaagtggcaagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgactaaca 200  Q
    |||||||||||||| | |  | |||||||||| | ||||| ||||| ||| |||| |||||| ||| ||||  ||||||||||||||||||||||    
T  49917578 cgtggaaggccaacaaagcagctgaagtggcatgtgtaacggacacgtcaacaccattaacatcaagttaacattttggatgcatttgactaaca 49917484  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 17332919 - 17332979
Alignment:
Q  136 caagggtaacagacacatcagcaccgttaacaccaaattaatgttttggatgcatttgact 196  Q
    |||| |||||| | |||| |||||| |||||| |||||||| |||||||||||||||||||    
T  17332919 caagtgtaacaaatacatgagcacctttaacatcaaattaacgttttggatgcatttgact 17332979  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 35063548 - 35063586
Alignment:
Q  161 gttaacaccaaattaatgttttggatgcatttgactaac 199  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  35063548 gttaacaccaagttaacgttttggatgcatttgactaac 35063586  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 49919731 - 49919772
Alignment:
Q  265 acactttcaaggacccaaacgagggtttactctaaaaagaat 306  Q
    ||||||||||||||||||| ||| |||||||| |||||||||    
T  49919731 acactttcaaggacccaaatgagagtttactcaaaaaagaat 49919772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 41739757 - 41739719
Alignment:
Q  161 gttaacaccaaattaatgttttggatgcatttgactaac 199  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  41739757 gttaacaccaagttaacgttttggatgcatttgactaac 41739719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 28643260 - 28643175
Alignment:
Q  70 aatgtttgctatcccatgcaattacgtccctgcctgcgtggaaggccaacgatgtggttgaagtggcaagggtaacagacacatca 155  Q
    |||||||| ||| | || |||||  ||||||| | ||||||||||||||| |||  |||| ||||||||| |||||||||| ||||    
T  28643260 aatgtttgttattctatacaattgagtccctgtcagcgtggaaggccaacaatgcagttggagtggcaagtgtaacagacaaatca 28643175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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