View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18388_low_3 (Length: 582)
Name: NF18388_low_3
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18388_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 36322991 - 36323558
Alignment:
| Q |
1 |
ttatattggtggtggttgatgatggtcgcccggcggcggagctcccattaggatcgatggttgagctcattttaagcttaggagaaggttgacctccccn |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36322991 |
ttatattggtggtggttgatgatggtcgcccggcagcggagctcccattaggatcgatggttgagctcattttaagcttaggagaaggttgacctcccca |
36323090 |
T |
|
| Q |
101 |
nnnnnnggacccttgggagaagcaacatggacaaacattgttaacaaaaaacaaaactcatgtgtgtatgtgtagctaaagattaatggcaaacctcggt |
200 |
Q |
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| T |
36323091 |
aaaaaaggacccttgggagaagcaacatggacaaacattgttaacaaaaaacaaaattcatgtgtgtatgtgtagctaaagattaatggcaaacctcggt |
36323190 |
T |
|
| Q |
201 |
taaaatatgcatatcattttcataatttgttatacgaatatgtgtaaattttttctaaagatcgagcgagccattgtagttaactaatgattctgtaaat |
300 |
Q |
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| T |
36323191 |
ttaaacatgcatatcattttcataatttgtaatacgaatatgtgtaaattttttctaaagatcgagcgagccattgtagttaactaatgattctgtaaat |
36323290 |
T |
|
| Q |
301 |
gcatatgaataaaaattttcctcaaatacctgaccgcaaaatattttaaattctttagcctatttaaaacttatcaattacaagtaatgtaatgaagtct |
400 |
Q |
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| T |
36323291 |
gcatatgaataaaaattttcctcaaatacctgaccgcaaaatattttaaattctttagcctatttaaaacttatcaattacaagtaatgtaatgaagtct |
36323390 |
T |
|
| Q |
401 |
atatattgtgaattatgttgcagggactggcgttactcacggtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaaaatgc |
500 |
Q |
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| T |
36323391 |
atatattgtgaattatgttgcagggactggcgttactcacagtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaaaatgc |
36323490 |
T |
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| Q |
501 |
agtgtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttg |
568 |
Q |
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| T |
36323491 |
agtgtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttg |
36323558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 404 - 568
Target Start/End: Original strand, 36330240 - 36330404
Alignment:
| Q |
404 |
tattgtgaattatgttgcagggactggcgttactcacggtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaaaatgcagt |
503 |
Q |
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||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||| |
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| T |
36330240 |
tattgtgaactatgctgcagggactggcgttactcacagtacaagcacattaccctaatctgaaaccagccatatgcaacttacttgacaaaaatgcagt |
36330339 |
T |
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| Q |
504 |
gtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttg |
568 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||||| |
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| T |
36330340 |
gtgtgaaaaaattaatggcaaccatgaagcttttctcttcattagtctatacttgttggcctttg |
36330404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 492 - 568
Target Start/End: Original strand, 37919830 - 37919906
Alignment:
| Q |
492 |
caaaaatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctacttgttggcctttg |
568 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||| |
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| T |
37919830 |
caaaaatgcagtgcgtgaaaaaattagtggcaaccatgaagcttttctcttcattagtctatacgtgttggcctttg |
37919906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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