View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18388_low_4 (Length: 565)

Name: NF18388_low_4
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18388_low_4
NF18388_low_4
[»] chr5 (5 HSPs)
chr5 (89-295)||(9082350-9082556)
chr5 (435-548)||(9082636-9082749)
chr5 (205-295)||(4032184-4032273)
chr5 (295-336)||(9082541-9082582)
chr5 (299-333)||(4032262-4032296)
[»] chr2 (1 HSPs)
chr2 (89-265)||(23833609-23833782)
[»] chr4 (3 HSPs)
chr4 (122-295)||(621261-621433)
chr4 (441-548)||(621033-621140)
chr4 (517-548)||(28590398-28590429)
[»] chr3 (3 HSPs)
chr3 (122-295)||(1576723-1576895)
chr3 (441-548)||(1577016-1577123)
chr3 (435-535)||(53421230-53421330)
[»] chr8 (1 HSPs)
chr8 (435-544)||(8570641-8570750)
[»] chr7 (3 HSPs)
chr7 (95-228)||(44419313-44419446)
chr7 (299-333)||(44419982-44420016)
chr7 (517-545)||(46201737-46201765)
[»] chr1 (4 HSPs)
chr1 (443-544)||(23092297-23092398)
chr1 (119-184)||(45905137-45905202)
chr1 (455-508)||(41501221-41501274)
chr1 (455-508)||(41511388-41511441)
[»] scaffold0026 (1 HSPs)
scaffold0026 (119-228)||(104649-104758)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 4e-89; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 89 - 295
Target Start/End: Original strand, 9082350 - 9082556
Alignment:
Q  89 cttccaccagcgactaaaaacaggttgcaaatgaacaaaatcgtcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttga 188  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9082350 cttccaccagcgaccaaaaacaggttgcaaatgaacaaaatcgtcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttga 9082449  T
Q  189 taaagaaaaatgaaggttgaatgatgaagattgggtttgtnnnnnnnnttggaatgtggggtttttgaacaaaaggaacattcatatgttcaagattctg 288  Q
    ||||||||||| ||||||||||||||||||||||||||||        ||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  9082450 taaagaaaaattaaggttgaatgatgaagattgggtttgtaaaaaaaattggaatgtagggtttttgaacagaaggaacattcatatgttcaagattctg 9082549  T
Q  289 aatccaa 295  Q
    |||||||    
T  9082550 aatccaa 9082556  T

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Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 435 - 548
Target Start/End: Original strand, 9082636 - 9082749
Alignment:
Q  435 accaccagaaaagcataatcatgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctt 534  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9082636 accaccagaaaagcataatcatgatgatggtgataacaacatagcaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctt 9082735  T
Q  535 tgtacccattcatt 548  Q
    ||||||| ||||||    
T  9082736 tgtacccgttcatt 9082749  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 4032184 - 4032273
Alignment:
Q  205 ttgaatgatgaagattgggtttgtnnnnnnnnttggaatgtggggtttttgaacaaaaggaacattcatatgttcaagattctgaatccaa 295  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||    
T  4032184 ttgaatgatgaagattgggtttgtaaaataa-ttggaatgtggggtttttgaacagaaggagcattgatatgttcaagcttctgaatccaa 4032273  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 9082541 - 9082582
Alignment:
Q  295 aagattctgaatccaacccatttcaaaaataggattcaaaaa 336  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9082541 aagattctgaatccaacccatttcaaaaataggattcaaaaa 9082582  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 4032262 - 4032296
Alignment:
Q  299 ttctgaatccaacccatttcaaaaataggattcaa 333  Q
    ||||||||||||||| |||||||||||||||||||    
T  4032262 ttctgaatccaacccgtttcaaaaataggattcaa 4032296  T

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Target: chr2 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 89 - 265
Target Start/End: Complemental strand, 23833782 - 23833609
Alignment:
Q  89 cttccaccagcgactaaaaacaggttgcaaatgaacaaaatcgtcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttga 188  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  23833782 cttccaccagcgaccaaaaacaggttgcagatgaacagaatcgtcctcttca--aacagccttgaaatctacaacattggggtgctcagataacttttga 23833685  T
Q  189 taaagaaaaatgaaggttgaatgatgaagattgggtttgtnnnnnnnnttggaatgtggggtttttgaacaaaagga 265  Q
     |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| |||||    
T  23833684 caaagaaaaatgaaggttgaatgatgaagattgggtttgt-aaaaaaattggaatgtggggtttttgaacagaagga 23833609  T

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Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 122 - 295
Target Start/End: Complemental strand, 621433 - 621261
Alignment:
Q  122 aacaaaatcgtcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttgataaagaaaaatgaaggttgaatgatgaagattg 221  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  621433 aacaaaatcatcctcttcacaaacaaccttgaaatctacaacattggggtgctcagataacttttgacaaagaaaaatgaaggttgaatgatgaagattg 621334  T
Q  222 ggtttgtnnnnnnnnttggaatgtggggtttttgaacaaaaggaacattcatatgttcaagattctgaatccaa 295  Q
    |||||||        ||||||||||||||||||||||| |||||||||| ||||||||||  |||| |||||||    
T  621333 ggtttgt-aaaaaaattggaatgtggggtttttgaacagaaggaacattgatatgttcaaacttctcaatccaa 621261  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 441 - 548
Target Start/End: Complemental strand, 621140 - 621033
Alignment:
Q  441 agaaaagcataatcatgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctttgtacc 540  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  621140 agaaaagcataatcatgatgatggtgataacaacaaagcaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctttgtacc 621041  T
Q  541 cattcatt 548  Q
    ||||||||    
T  621040 cattcatt 621033  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 548
Target Start/End: Original strand, 28590398 - 28590429
Alignment:
Q  517 catatgtatgtctttctttgtacccattcatt 548  Q
    ||||||||||||||||||||||||||||||||    
T  28590398 catatgtatgtctttctttgtacccattcatt 28590429  T

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Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 122 - 295
Target Start/End: Original strand, 1576723 - 1576895
Alignment:
Q  122 aacaaaatcgtcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttgataaagaaaaatgaaggttgaatgatgaagattg 221  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  1576723 aacaaaatcatcctcttcacaaacaaccttgaaatctacaacattggggtgctcagataacttttgacaaagaaaaatgaaggttgaatgatgaagattg 1576822  T
Q  222 ggtttgtnnnnnnnnttggaatgtggggtttttgaacaaaaggaacattcatatgttcaagattctgaatccaa 295  Q
    |||||||        ||||||||||||||||||||||| |||||||||| ||||||||||  |||| |||||||    
T  1576823 ggtttgt-aaaaaaattggaatgtggggtttttgaacagaaggaacattgatatgttcaaacttctcaatccaa 1576895  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 441 - 548
Target Start/End: Original strand, 1577016 - 1577123
Alignment:
Q  441 agaaaagcataatcatgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctttgtacc 540  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1577016 agaaaagcataatcatgatgatggtgataacaacaaagcaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctttgtacc 1577115  T
Q  541 cattcatt 548  Q
    ||||||||    
T  1577116 cattcatt 1577123  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 435 - 535
Target Start/End: Original strand, 53421230 - 53421330
Alignment:
Q  435 accaccagaaaagcataatcatgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctt 534  Q
    ||||||| ||||||||||||| ||||||| |||| ||||||||| || |||||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  53421230 accaccaaaaaagcataatcacgatgatgttgatgacaacaaaataataaccttcatcccaaaattgcaggaaggagcaggacatatgtatatctttctt 53421329  T
Q  535 t 535  Q
    |    
T  53421330 t 53421330  T

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Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 435 - 544
Target Start/End: Complemental strand, 8570750 - 8570641
Alignment:
Q  435 accaccagaaaagcataatcatgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctt 534  Q
    ||||||| ||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  8570750 accaccataaaagcataatcacgatgatggtgataacaacaaaataataaccttcatcccaaaattgcaggaaggagcaggacatatgtatgtctttctt 8570651  T
Q  535 tgtacccatt 544  Q
    ||||||||||    
T  8570650 tgtacccatt 8570641  T

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Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 95 - 228
Target Start/End: Original strand, 44419313 - 44419446
Alignment:
Q  95 ccagcgactaaaaacaggttgcaaatgaacaaaatcgtcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttgataaaga 194  Q
    |||||||| ||||||||||  || |||||||||||| ||||||||| |||||||||||| |||||||||||| |||||| || |||||| |||| |||||    
T  44419313 ccagcgaccaaaaacaggtgtcagatgaacaaaatcttcctcttcataaacagccttgagatctacaacatttgggtgcccagataactattgacaaaga 44419412  T
Q  195 aaaatgaaggttgaatgatgaagattgggtttgt 228  Q
    ||||||||||||||||||||||||||||||||||    
T  44419413 aaaatgaaggttgaatgatgaagattgggtttgt 44419446  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 44419982 - 44420016
Alignment:
Q  299 ttctgaatccaacccatttcaaaaataggattcaa 333  Q
    |||||||||||||||||||||||||||||||||||    
T  44419982 ttctgaatccaacccatttcaaaaataggattcaa 44420016  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 545
Target Start/End: Complemental strand, 46201765 - 46201737
Alignment:
Q  517 catatgtatgtctttctttgtacccattc 545  Q
    |||||||||||||||||||||||||||||    
T  46201765 catatgtatgtctttctttgtacccattc 46201737  T

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Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 443 - 544
Target Start/End: Original strand, 23092297 - 23092398
Alignment:
Q  443 aaaagcataatcatgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctttgtaccca 542  Q
    ||||||||||||| |||||||||||||||||||||  || |||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||    
T  23092297 aaaagcataatcacgatgatggtgataacaacaaagtaataaccttcatcccaaaattgcaggaaggagcaggacatatgtatatctttctttgtaccca 23092396  T
Q  543 tt 544  Q
    ||    
T  23092397 tt 23092398  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 45905137 - 45905202
Alignment:
Q  119 atgaacaaaatcgtcctcttcacaaacagccttgaaatctacaacattggggtgctcatataactt 184  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||||| |||||| || |||||||    
T  45905137 atgaacaaaatcttcctcttcataaacagccttgagatctacaacatttgggtgcccagataactt 45905202  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 455 - 508
Target Start/End: Complemental strand, 41501274 - 41501221
Alignment:
Q  455 atgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaag 508  Q
    |||||| ||||||||| |||||| |||||||| |||||||||||||||||||||    
T  41501274 atgatggtggtgataagaacaaagcaacaaccatcatcccaaaattgcaggaag 41501221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 508
Target Start/End: Complemental strand, 41511441 - 41511388
Alignment:
Q  455 atgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaag 508  Q
    |||||| ||||||||| |||||| ||||| |  |||||||||||||||||||||    
T  41511441 atgatggtggtgataagaacaaagcaacagctatcatcccaaaattgcaggaag 41511388  T

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Target: scaffold0026 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 119 - 228
Target Start/End: Original strand, 104649 - 104758
Alignment:
Q  119 atgaacaaaatcgtcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttgataaagaaaaatgaaggttgaatgatgaaga 218  Q
    |||||||||||| ||||||||| ||||| |||||| |||||||| ||| |||||| || |||||| ||||||||||||| ||||||||||||||||||||    
T  104649 atgaacaaaatcttcctcttcataaacaaccttgagatctacaatatttgggtgcccagataactcttgataaagaaaattgaaggttgaatgatgaaga 104748  T
Q  219 ttgggtttgt 228  Q
    ||||||||||    
T  104749 ttgggtttgt 104758  T

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