View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18388_low_5 (Length: 554)
Name: NF18388_low_5
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18388_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 270 - 434
Target Start/End: Original strand, 12551280 - 12551445
Alignment:
| Q |
270 |
atgtttttcttttcttttatcttatcttattattgtatgtgtttgtttggccactatggtcattgtttgcttctaatcgttttacgaaacacatctaagt |
369 |
Q |
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| T |
12551280 |
atgtttttcttttcttttatcttatcttattattgtatgtgtttgtttggccgctatggttattgtttgcttcgaatcgttttactacacacatctaagt |
12551379 |
T |
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| Q |
370 |
attggtgtaagttataactattatgaaacaataaattaaaattagacacaa-caagattgtttttt |
434 |
Q |
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| T |
12551380 |
attggtgtaagttataactattatgaaacaataaattaaaattagacacaaccaagattttttttt |
12551445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 50 - 184
Target Start/End: Original strand, 12551140 - 12551275
Alignment:
| Q |
50 |
tctagggttcggaaatattctaaacaccactgtgagtaaatcatcgaatctcttgttcaagagactaagaaaattgcaggtattaggg-tgtatggttga |
148 |
Q |
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| T |
12551140 |
tctagggttcgaaaatattctaaacacctctgtgagtaaatcatcgaatctcttgttcaagagactaagaaaattgcaggtattagggttttattgttga |
12551239 |
T |
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| Q |
149 |
cggattatttttaataattcttgtatctcttcgtaa |
184 |
Q |
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| T |
12551240 |
cggattatttttaataattcttgtatctcttagtaa |
12551275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 422 - 537
Target Start/End: Original strand, 12551471 - 12551583
Alignment:
| Q |
422 |
aagattgttttttattttagggaaacaacaagattgttaaaaccgagttgaaactgaaacgcacaaggagaaacaatttgttttttcgtcnnnnnnnttt |
521 |
Q |
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| T |
12551471 |
aagattgttttttattt-agggaaacaacaagattgttaaaaccgagttgaaactgaaacgcacaaggagaaacaatttgtttt--cgtcaaaatttttt |
12551567 |
T |
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| Q |
522 |
atcctccaagagattt |
537 |
Q |
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| T |
12551568 |
atcctccaagagattt |
12551583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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