View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18388_low_8 (Length: 452)
Name: NF18388_low_8
Description: NF18388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18388_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 395062 - 394624
Alignment:
| Q |
1 |
aaatatgaatgcttatgttaatgttatatatctttgtttgtaacactccttgtttggaagggaactaagcaacactctttgtaaagttctctttataaac |
100 |
Q |
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| T |
395062 |
aaatatgaatgcttatgttaatgttatatatctttgtttgtaacactccttgttttgaagggaactaagcaacactctttgtaaagttctctttataaac |
394963 |
T |
|
| Q |
101 |
aatacaaataacaaataaaatagttatagtaaacgatatatgcggatcataatgactatttagtagtaagtgtaacaaactttcgaaaatttagtt---n |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
394962 |
aatacaaataacaaataaaatagttatagtaaacgatatatgcggatcataatgactatttagtagtaagtgtaacaaactttcgaaaatttagttataa |
394863 |
T |
|
| Q |
198 |
nnnnnnnggaagaaaacaaattgaatggaccatggacactttgaaagctgaagtggtcttgtttcttgcttgattcacggtgaattaatttgggcaaata |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
394862 |
aaaaaaaggaagaaaacaaattgaatggaccatggacactttgaaagctgaagtggtcttgtttcttgcttgattcacggtgaattaatttggccaaata |
394763 |
T |
|
| Q |
298 |
gtttctga------nnnnnnnngtggatttggcatatttatagctaatttgttatatgattatgttgttttacaaatgcttattctttaacaaatttttc |
391 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
394762 |
gtttctgattttttttttttttgtggatttggcatatttatagctaatttgttatatgattatgttgttttacaaatgcttattctttaacaaatttttc |
394663 |
T |
|
| Q |
392 |
cctctaattcatgatgattaggcatatttgttttcttttgag |
433 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |
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| T |
394662 |
cctctaattc---atgattaggcatatttgttttcttttgag |
394624 |
T |
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