View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18389_high_5 (Length: 305)
Name: NF18389_high_5
Description: NF18389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18389_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 32213637 - 32213474
Alignment:
| Q |
13 |
catcaaccaatcaagaactgccaagtaagcttaagtataatgaactaaacctaatatgttagggtgctgtattagataaactggacattaagccaagaga |
112 |
Q |
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| T |
32213637 |
catcaaccaatcaagaactgccaagtcagcttaagtataatgaactaaacctaatatgttagggtgctgtattagataaactggacattaagccaagaga |
32213538 |
T |
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| Q |
113 |
ttggtcttgctttattttgttaaattgttgtgaacatagaaactcgattgttcttgtttataat |
176 |
Q |
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| T |
32213537 |
ttggtcttgctttattttgttaaattgtcgtgaacatagaaactcgattgttcttgttaataat |
32213474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 193 - 305
Target Start/End: Complemental strand, 32212941 - 32212829
Alignment:
| Q |
193 |
tgtagaaattaaacgaccctgtagaaaccaacttattcttttcattacttggacgacgttttggtacacttggtaaaataccatcaatagctcatagaaa |
292 |
Q |
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| T |
32212941 |
tgtagaaattaaacgaccctgtagaaaccaacttattcttttcattacttggacgacgttttggtacacttggtaaaagaccatcaatagctcataaaaa |
32212842 |
T |
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| Q |
293 |
cggtttataactt |
305 |
Q |
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| T |
32212841 |
cggtttataactt |
32212829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 25228291 - 25228235
Alignment:
| Q |
100 |
ttaagccaagagattggtcttgctttattttgttaaattgttgtgaacatagaaactc |
157 |
Q |
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| T |
25228291 |
ttaagccaagacattggtcttgatctattttgttaaattgtcgtg-acatagaaactc |
25228235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 19996004 - 19995942
Alignment:
| Q |
71 |
ttagggtgctgtattagataaactggacattaagccaagagattggtcttgctttattttgtt |
133 |
Q |
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| T |
19996004 |
ttagggttctatattagataaataggacattcaaccaagaaattggtcttgatttattttgtt |
19995942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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