View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18389_low_1 (Length: 573)
Name: NF18389_low_1
Description: NF18389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18389_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Original strand, 51856554 - 51857117
Alignment:
| Q |
1 |
tgttacccttcaaactagattgattaaacctgttttaaaacgagattgattaaagtcacgcattgcaggaccaatttcactagaatcatgtcttattatt |
100 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51856554 |
tgttacccttcaaactagatcgattaaacctgatttaaaacgagattgattaaagtcacacattgcaggaccaatttcactagaatcatgtcttattatt |
51856653 |
T |
|
| Q |
101 |
atgttccctgtttaataatcaacaaccaatataagagtggcttgttacccttcaaactttaataataaaaattaaactttaatttttcttaacacgacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51856654 |
atgttccctgtttaataatcaacaaccaatataagagtggcttgttacccttcaaactttaataataaaaattaaactttaatttttcttaacacagcac |
51856753 |
T |
|
| Q |
201 |
aaataagaaaaagggaaaataaagaaagggaactagatctagaagaaaacctgtactacatgataatgaagggtccttctaaaaatcatttagctccttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856754 |
aaataagaaaaagggaaaataaagaaagggaactagatctagaagataacctgtactacatgataatgaagggtccttctaaaaatcatttagctccttc |
51856853 |
T |
|
| Q |
301 |
acgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacacatcgttggatctagaaagc |
400 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51856854 |
acgatgcgctttgaagccgttataattggaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacgcatcgttggatctagaaagc |
51856953 |
T |
|
| Q |
401 |
aataaaaagaaattgaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttaccaatcaatttcaatcagaaggaaag |
500 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
51856954 |
aataaaaag-aattgaaaggaaaaaagtttcaattgggatatggaacaaaagataaatgaagggttaccacttaccaatcgatttcaatcagcaggaaag |
51857052 |
T |
|
| Q |
501 |
ataaatttggatatgaaatttttcttgtagtgagagaggttaatgttcatttgttcttgtctgtg |
565 |
Q |
| |
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| T |
51857053 |
ataaatttggatatgaaatttttcttgtagtgagagaggttaatgttcatttgttcttgtctgtg |
51857117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 158
Target Start/End: Original strand, 51856538 - 51856569
Alignment:
| Q |
127 |
caatataagagtggcttgttacccttcaaact |
158 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
51856538 |
caatataagagtggcttgttacccttcaaact |
51856569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 127 - 526
Target Start/End: Original strand, 8945724 - 8946112
Alignment:
| Q |
127 |
caatataagagtggcttgttacccttcaaactttaataataaaaattaaactttaatttttcttaacacgacacaaataagaaaaagggaaaataaagaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8945724 |
caatataagagtggcttgttacccttcaaactttaataataaaaatcaaactttaatttttcttaacacagcacaaataagaaaaagggaaaataaagaa |
8945823 |
T |
|
| Q |
227 |
agggaactagatctagaagaaaacctgtactacatgataatgaagggtccttctaaaaatcatttagctccttcacgatgcgctttgaagccgttataat |
326 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8945824 |
agggaactagatctagaagataacctgtactacatgataatgaagggtcgttctaaaaatcatttagctccttcacgatgtgctttgaagccgttataat |
8945923 |
T |
|
| Q |
327 |
tgaaacttcaaaataacaacaaatggaaaacataataaagattatcatgcaacacatcgttggatctagaaagcaataaaaagaaattgaaaggaaaaaa |
426 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8945924 |
tgaaacttcaaaataac-----------aacataataaagattatcatgcaacacatcgttggatctagaaagcaataaaatgaaattgaaaggaaaaaa |
8946012 |
T |
|
| Q |
427 |
gtttcaattgggatatggaacaaaagataaatgaagggttaccacttaccaatcaatttcaatcagaaggaaagataaatttggatatgaaatttttctt |
526 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8946013 |
gtttcaattgggatatggaacaaaagataaatgaagggttaccacttagcaatcgatttcaatcagcaggaaagataaatttggatatgaaatttttctt |
8946112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 96 - 368
Target Start/End: Original strand, 43262898 - 43263171
Alignment:
| Q |
96 |
ttattatgttccctgtttaataatcaacaaccaatataagagtggcttgttacccttcaaactttaataataaaaattaaactttaatttttctt-aaca |
194 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| || |||| |
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| T |
43262898 |
ttattatgttgcctgttcaataatcaacaaccaatatgagagtggattgttacccttcaaactttaataataaaaattaaacttttctttttttttaaca |
43262997 |
T |
|
| Q |
195 |
cgacacaaataagaaaaagggaaaataaagaaagggaactagatctagaagaaaacctgtactacatgataatgaagggtccttctaaaaatcatttagc |
294 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| ||||| |||||| |
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| T |
43262998 |
cagcacaaataagaaaaagggaaaataaagaaagggaactagatctagaagataacctgtactgcatgatgttgaagggtccttctacaaatcctttagc |
43263097 |
T |
|
| Q |
295 |
tccttcacgatgcgctttgaagccgttataattgaaacttcaaaataacaacaaatggaaaacataataaagat |
368 |
Q |
| |
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|| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43263098 |
tcattcacgatgcactttgaagccgtaataattgaaacttcaaaataacaacaaatgaaaaacataataaagat |
43263171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 45480441 - 45480376
Alignment:
| Q |
33 |
ttttaaaacgagattgattaaagtcacgcattgcaggaccaatttcactagaatcatgtcttatta |
98 |
Q |
| |
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||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||| ||||||| |
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|
| T |
45480441 |
ttttaaaacgagattgattaaagtcacacgttgcagtaccaatttgactagaatcataacttatta |
45480376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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