View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18389_low_11 (Length: 234)

Name: NF18389_low_11
Description: NF18389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18389_low_11
NF18389_low_11
[»] chr4 (2 HSPs)
chr4 (17-217)||(55330528-55330728)
chr4 (21-206)||(55335971-55336156)
[»] chr2 (17 HSPs)
chr2 (25-136)||(8403726-8403837)
chr2 (120-211)||(8405607-8405698)
chr2 (120-199)||(8416823-8416902)
chr2 (25-195)||(8376093-8376263)
chr2 (120-195)||(8395874-8395949)
chr2 (120-195)||(8411743-8411818)
chr2 (120-195)||(8433841-8433916)
chr2 (25-71)||(8395779-8395825)
chr2 (120-182)||(8430907-8430969)
chr2 (25-86)||(8368103-8368164)
chr2 (25-86)||(8401246-8401307)
chr2 (25-86)||(8422823-8422884)
chr2 (25-71)||(8405747-8405793)
chr2 (144-195)||(8401365-8401416)
chr2 (25-71)||(8411867-8411913)
chr2 (25-71)||(8431018-8431064)
chr2 (25-71)||(8433965-8434011)
[»] scaffold1738 (1 HSPs)
scaffold1738 (120-195)||(20-95)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 55330728 - 55330528
Alignment:
Q  17 agtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330728 agtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaa 55330629  T
Q  117 acattggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330628 acattggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagc 55330529  T
Q  217 t 217  Q
    |    
T  55330528 t 55330528  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 55336156 - 55335971
Alignment:
Q  21 aatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacat 120  Q
    |||| |||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||  ||||| |||| | ||||| | ||||    |||     
T  55336156 aatggttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacac 55336057  T
Q  121 tggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgag 206  Q
    | || ||||||||||| || |  ||||||||||| ||| ||||||||||||||||||| |||||||| ||||||| ||||||||||    
T  55336056 ttgaggagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgtttctgag 55335971  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 8403837 - 8403726
Alignment:
Q  25 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattgga 124  Q
    ||||||| ||||| |||||| |||||||||| ||||| ||||||||||| |||||||||||  || |||| ||||||||||| ||||| ||||   | ||    
T  8403837 cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaagaaattattga 8403738  T
Q  125 agagaaagattt 136  Q
    ||||||||||||    
T  8403737 agagaaagattt 8403726  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 8405698 - 8405607
Alignment:
Q  120 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgag 211  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   |||||||||| ||| |||||| ||||    
T  8405698 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgag 8405607  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 8416902 - 8416823
Alignment:
Q  120 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgt 199  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   ||||||||||||||    
T  8416902 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaaatgt 8416823  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 8376093 - 8376263
Alignment:
Q  25 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattgga 124  Q
    ||||||| |||||||||||| |||| ||||| |||||||||||||||  || |||||| ||| | ||  || | |||    |  |||||  ||| ||||     
T  8376093 cttttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctggtggtttcttcaacttgatagaaacttcaattgattcaactttggg 8376192  T
Q  125 agagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa 195  Q
    |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   ||||||||||    
T  8376193 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaa 8376263  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 8395874 - 8395949
Alignment:
Q  120 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa 195  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   ||||||||||    
T  8395874 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaa 8395949  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 8411818 - 8411743
Alignment:
Q  120 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa 195  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||| ||||||||||||||   ||||||||||    
T  8411818 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaa 8411743  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 8433916 - 8433841
Alignment:
Q  120 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa 195  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||| ||||||||||||||   ||||||||||    
T  8433916 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaa 8433841  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 8395779 - 8395825
Alignment:
Q  25 cttttgaacatggtggacaaattggtatggtatttgaaatgtataga 71  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  8395779 cttttgaacatggtggacaaattggcatggtttttgaaatgtataga 8395825  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 8430969 - 8430907
Alignment:
Q  120 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttg 182  Q
    |||| |||||||||||| ||||  ||||||||||||||| ||||||||||||| |||||||||    
T  8430969 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttg 8430907  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 8368164 - 8368103
Alignment:
Q  25 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattc 86  Q
    ||||||| |||||||||||| |||||||||| | |||||||||||||  |||||||||||||    
T  8368164 cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattc 8368103  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 8401246 - 8401307
Alignment:
Q  25 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattc 86  Q
    ||||||| |||||||||||| |||||||||| | |||||||||||||  |||||||||||||    
T  8401246 cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattc 8401307  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 8422823 - 8422884
Alignment:
Q  25 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattc 86  Q
    ||||||| |||||||||||| |||||||||| | |||||||||||||  |||||||||||||    
T  8422823 cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattc 8422884  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 8405793 - 8405747
Alignment:
Q  25 cttttgaacatggtggacaaattggtatggtatttgaaatgtataga 71  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||||    
T  8405793 cttttgaacatggtggacaagttggcatggtttttgaaatgtataga 8405747  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 8401365 - 8401416
Alignment:
Q  144 agagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa 195  Q
    |||||||||||||| ||||||||||| ||| |||||||||  ||||||||||    
T  8401365 agagaaaatggagatttatttgaaattaaattggctttgaaattgggaagaa 8401416  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 8411913 - 8411867
Alignment:
Q  25 cttttgaacatggtggacaaattggtatggtatttgaaatgtataga 71  Q
    ||||||| |||||||||||| |||| ||||| |||||||||||||||    
T  8411913 cttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8411867  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 8431064 - 8431018
Alignment:
Q  25 cttttgaacatggtggacaaattggtatggtatttgaaatgtataga 71  Q
    ||||||| |||||||||||| |||| ||||| |||||||||||||||    
T  8431064 cttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 8434011 - 8433965
Alignment:
Q  25 cttttgaacatggtggacaaattggtatggtatttgaaatgtataga 71  Q
    ||||||| |||||||||||| |||| ||||| |||||||||||||||    
T  8434011 cttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8433965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1738 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 20 - 95
Alignment:
Q  120 ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa 195  Q
    |||| |||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||   ||||||||||    
T  20 ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaa 95  T

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